View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6068_low_2 (Length: 411)
Name: NF6068_low_2
Description: NF6068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6068_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 18429824 - 18429423
Alignment:
| Q |
17 |
acaattggacgtaattctctacaatatcaagaatcgtgatcatgatttaaacctgttgtatgcgcaaa-------tcctactcgatttgagatttcaaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
18429824 |
acaattggacgtaattctctacaatatcaagaatcgtgatcatgatttaaacctgttgtatgcgcacagcgcatatcctactcgatttgagatttcaaac |
18429725 |
T |
|
| Q |
110 |
acctacactacgtccattcatataatttgtgaaggaaatgtgaggaccagattatatgatctctgcaatgaccagattatatcatcttgaacatttcttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18429724 |
acctacactacgtccattcatataatttgtgaaggaaatgtgaggaccagattatatgatctctgcaatgaccatattatatcatcttgaacatttcttt |
18429625 |
T |
|
| Q |
210 |
a---ccagctaattcttcttcagataagctctctgcaatgacctgaaaaacgaaaaggatggtaaaatgaaaaaggttccaactataacatctcatctta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18429624 |
taatccagctaattcttcttcagataagctctctgcaacgacctgaaaaacgaaaaggatggtaaaatgaaaaaggttcaaactataacatctcatctta |
18429525 |
T |
|
| Q |
307 |
accttgcagccataaatccacgatgaaatacttccgatttacacgcatttagtgtaattatcgtcatacttaattttaagtataacgatgatgtccatct |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || || ||||||| || |
|
|
| T |
18429524 |
accttgcagccataaatccacgatgaaagacttccaatttacacgcatttagtgtaattttcgacatacttaattttaagtattactattatgtccagct |
18429425 |
T |
|
| Q |
407 |
ca |
408 |
Q |
| |
|
|| |
|
|
| T |
18429424 |
ca |
18429423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 189 - 356
Target Start/End: Complemental strand, 18402195 - 18402024
Alignment:
| Q |
189 |
tatcatcttgaacatttcttga---ccagctaattcttcttcagataagctctctgcaatgacctgaaaaacgaaaaggatggtaaaatgaaaaa-ggtt |
284 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
18402195 |
tatcatcttgaacatttcttttaatccagccaattcttcttcagataagctctctgcaatgacctgaaaaacgcaaaggatggtaaaatgaaaaaaggtt |
18402096 |
T |
|
| Q |
285 |
ccaactataacatctcatcttaaccttgcagccataaatccacgatgaaatacttccgatttacacgcattt |
356 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18402095 |
caaactataacatctcatcttaaccttgcagccagaaatccacgatgaaagacttccgatttacacgcattt |
18402024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University