View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6069_high_4 (Length: 239)
Name: NF6069_high_4
Description: NF6069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6069_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 49164212 - 49164108
Alignment:
| Q |
118 |
ctgagagtgaatgtattgatagtatatagtataggtagatcagatagagatagagagaccacaagaataggagtgggaccatatgtaagggaatggggac |
217 |
Q |
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| T |
49164212 |
ctgagagtgaatgcattgatagtatatagtataggtagattagatagagatagagagaccacaagaataggagtgggaccatatgtaagggaatggggac |
49164113 |
T |
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| Q |
218 |
acata |
222 |
Q |
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| T |
49164112 |
acata |
49164108 |
T |
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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 49164331 - 49164247
Alignment:
| Q |
24 |
cggaaagaaaagaaagggtaccaaaatggtgaaaactaccctttagcgttagaagaagatagcgatgtatatatgacaaatgaaa |
108 |
Q |
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| T |
49164331 |
cggaaagaaaagaaagggtaccaaaatggtgaaaactaccctttagcgttagaagaagatagcgatgtatatatgacaaatgaaa |
49164247 |
T |
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