View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6069_high_5 (Length: 230)

Name: NF6069_high_5
Description: NF6069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6069_high_5
NF6069_high_5
[»] chr1 (1 HSPs)
chr1 (55-215)||(31681903-31682061)
[»] chr2 (1 HSPs)
chr2 (55-215)||(41724873-41725034)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 31682061 - 31681903
Alignment:
Q  55 tggttagggcaggacctaaagggtttggtcaaaagattgttcaaacggaagatgatgattgattaggtcctccaatgcatttttgcattgaaatcagatt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31682061 tggttagggcaggacctaaagggtttggtcaaaagattgttcaaacggaagatgatgattgattaggtcctccaatgcatttttgcattgaaatcagatt 31681962  T
Q  155 tattttacttgaaccnnnnnnnccccgatggtttagaaagttgtgtagtcatcacaatgtt 215  Q
    ||  |||||||||||       ||||||||||| |||||||||||||||||||||||||||    
T  31681961 ta--ttacttgaacctttttttccccgatggttaagaaagttgtgtagtcatcacaatgtt 31681903  T

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Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 41725034 - 41724873
Alignment:
Q  55 tggttagggcaggacctaaagggtttggtcaaaagattgttcaaacggaagatgatgattgattaggtcctccaatgcatttttgcattgaaatcagatt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  41725034 tggttagggcaggacctaaagggtttggtcaaaagattgttcaaacggaagatgatgattgattaggtcctccgatgcatttttgcattgaaatcagatc 41724935  T
Q  155 tattttacttgaacc-nnnnnnnccccgatggtttagaaagttgtgtagtcatcacaatgtt 215  Q
    |||||||||||||||        ||||||| |||||||||||||||||||||||||||||||    
T  41724934 tattttacttgaacctttttttcccccgattgtttagaaagttgtgtagtcatcacaatgtt 41724873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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