View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6069_high_6 (Length: 214)
Name: NF6069_high_6
Description: NF6069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6069_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 31046225 - 31046422
Alignment:
| Q |
1 |
cattttcttcatcttctgccttccattttttcattatcttcatcaaccttcaaggnnnnnnnnnntccaaataccaaagcactaaatcactaaacttcca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||| ||| |
|
|
| T |
31046225 |
cattttcttcatcttctaccttccattttttcattatcttcatcaaccttcaaggaaaagaaa--ttcaaataccaaaccactaaatcactacactgcca |
31046322 |
T |
|
| Q |
101 |
tcttcatcttcttctcttcacacactccaatttgacatattgtcgtgaatgaatttgatttgtctcttcctaccggtttgtttactcatattcttaagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31046323 |
tcttcatcttcttctcttcacacactccaatttaacatattgtcgtgaatgaatttgatttgtctcttcctaccggtttgtttactcatattcttaagaa |
31046422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31052529 - 31052581
Alignment:
| Q |
1 |
cattttcttcatcttctgccttccattttttcattatcttcatcaaccttcaa |
53 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
31052529 |
cattttcttcatcttctaccttccatttcttcattgtcttcatcaaccttcaa |
31052581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 6009402 - 6009353
Alignment:
| Q |
4 |
tttcttcatcttctgccttcca-ttttttcattatcttcatcaaccttca |
52 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
6009402 |
tttcttcatcttcttccttccacttttttcatcatcttcatcaacattca |
6009353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 14790834 - 14790883
Alignment:
| Q |
4 |
tttcttcatcttctgccttcca-ttttttcattatcttcatcaaccttca |
52 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
14790834 |
tttcttcatcttcttccttccacttttttcatcatcttcatcaacattca |
14790883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 5347885 - 5347934
Alignment:
| Q |
4 |
tttcttcatcttctgccttcca-ttttttcattatcttcatcaaccttca |
52 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
5347885 |
tttcttcatcttcttccttccacttttttcatcatcttcatcaacattca |
5347934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 47470853 - 47470898
Alignment:
| Q |
2 |
attttcttcatcttctgccttcca-ttttttcattatcttcatcaa |
46 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
47470853 |
attttcttcatcttcttccttccacttttttcatcatcttcatcaa |
47470898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 50838233 - 50838184
Alignment:
| Q |
4 |
tttcttcatcttctgccttcca-ttttttcattatcttcatcaaccttca |
52 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
50838233 |
tttcttcatcttcttccttccacttttttcatcatcttcatcaacattca |
50838184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 4592789 - 4592838
Alignment:
| Q |
4 |
tttcttcatcttctgccttcca-ttttttcattatcttcatcaaccttca |
52 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
4592789 |
tttcttcatcttcttccttccacttttttcatcatcttcatcaacattca |
4592838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 33003703 - 33003659
Alignment:
| Q |
3 |
ttttcttcatcttctgccttcca-ttttttcattatcttcatcaa |
46 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
33003703 |
ttttcttcatcttcttccttccacttttttcattatctacatcaa |
33003659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University