View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6069_low_3 (Length: 385)
Name: NF6069_low_3
Description: NF6069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6069_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 26410019 - 26410159
Alignment:
| Q |
1 |
ctgaaaaccaagaaagcagctgtcctaaagaacaaaacaaaactctcattgactcttaactcaaaagtccttcagttctcaatatcacacctatcctcat |
100 |
Q |
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| T |
26410019 |
ctgaaaaccaagaaagcagctgtcctaaagaacaaaacaaaactctagttgactcttaactcaaaagtccttcagttctcaatatcacacctatcctcat |
26410118 |
T |
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| Q |
101 |
gacatcatccccaccatgcaaatcctccataaatatcacac |
141 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26410119 |
gacatcatccccaccatgcaaatcctccataaataccacac |
26410159 |
T |
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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 26410231 - 26410320
Alignment:
| Q |
213 |
atgttactacaattactattcttattcctgttctttccattttcaacaacatcattaaacatatggccaaaaccaagaaacctcacgtgg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410231 |
atgttactacaattactattcttattcctgttctttccattttcaacaacatcattaaacatatggccaaaaccaagaaacctcacgtgg |
26410320 |
T |
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