View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6071_high_3 (Length: 313)
Name: NF6071_high_3
Description: NF6071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6071_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 9408795 - 9409073
Alignment:
| Q |
18 |
atcttttctttctttattgtgactgatcagcatgaacagttaaatattttatgtttatcgtactatttttctgtgcatgcagttttctttttcaattcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9408795 |
atcttttctttctttattgtgactgatcagcatgaacagttaaatatcttatgtttatcgtactatttttctgtgcatgaagttttctttttcaattcat |
9408894 |
T |
|
| Q |
118 |
taatataccaaatataccaaagggta-taccttttcgttaagttctaaatctaaaggatattactcnnnnnnnnatcataaagacaaagcatattacatt |
216 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
9408895 |
taatataccaaa---------gggtaataccttttcgttaagttctaaatctaaaggatattactcttttttttatcata--gacaaagcatattacatt |
9408983 |
T |
|
| Q |
217 |
acatgaaaataatcgaaacctatggtaatggaatattaagaacatattaggttatcataaaaaatatacatcaaatgcagtttcttccta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9408984 |
acatgaaaataatcgaaacctatggtaatggaatattaagaacatattaggttatcattaaaaatatacatcaaatgcagtttcttccta |
9409073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University