View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6071_high_5 (Length: 258)
Name: NF6071_high_5
Description: NF6071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6071_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38752831 - 38753069
Alignment:
| Q |
1 |
agcttctgctttcttgctctcagaatagggcattcttaatttgacataagagtgataccaccacttgttgaaaccatgaatggtattgctactactactg |
100 |
Q |
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| T |
38752831 |
agcttctgctttcttgctctcagaatagggcattcttaatttgacataagagtgataccaccacttgttgaaaccatgaatggtattgctactactactg |
38752930 |
T |
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| Q |
101 |
atgatcagtgtatgcaattctatcatcatcatcatcaacaacctttcatggatattagcatggaaggattctcacatgcaactatggtgacaacaagtcc |
200 |
Q |
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| T |
38752931 |
atgatcagtgtatgcaattctatcatcatcatcatcaacaacctttcatggatattagcatggaaggattctcacatgcaactatggttacaacaagtcc |
38753030 |
T |
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| Q |
201 |
caccatgtcatcaaatggtcacttgaccccaaagaacaa |
239 |
Q |
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| T |
38753031 |
caccatgtcatcaaatggtcacttgaccccaaagaacaa |
38753069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 7006376 - 7006233
Alignment:
| Q |
68 |
ttgaaaccatgaatggtattgctactac---tactgatgatcagtgtatgcaattctatcatcatcatcatcaacaacctttcatggatattagcatgga |
164 |
Q |
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| T |
7006376 |
ttgaaatcatgaatggtattgctactacggatcatgatgatcagtgtatgcaattatattatcatcatcatcaacaaacttgaaaggatatttgccaaga |
7006277 |
T |
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| Q |
165 |
aggattc-tcacatgcaactatggtgacaacaagtcccaccatg |
207 |
Q |
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| T |
7006276 |
aggattcttcagatgcaacttttatgacaacaagtccaaccatg |
7006233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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