View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6071_low_1 (Length: 423)
Name: NF6071_low_1
Description: NF6071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6071_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 31047375 - 31046979
Alignment:
| Q |
9 |
acatcatcatcaacacaaccaacagcaataaaccaagagacatggaaccaactcttaggcaacaacaactgggaaaccttattaaacccactagacctca |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31047375 |
acatcatcatcaacacaaccaacaacaataaaccaagagacatggaaccaactcttaggcaacaacaactgggaaaccttattaaacccactagacctca |
31047276 |
T |
|
| Q |
109 |
atctccgcaacctcatcctccgttgtggtgacttcatacaaacaacctacgactctttcaacaacgaccaaaactctatctactgcggttcaagccgttt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31047275 |
atctccgcaacctcatcctccgttgtggtgacttcatacaaacaacctacgactctttcaacaacgaccaaaactctatctactgcggttcaagccgtta |
31047176 |
T |
|
| Q |
209 |
tggcaaaacctcattctttaacaaagtcatgcttgaaaaccctacacactacactgttgtttctttcctttacgctacagcacgtgtttctgttcctgaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31047175 |
tggcaaaacctcattctttaacaaagtcatgcttgaaaaccctacacactacactgttgtttctttcctttatgctacagcacgtgtttctgttcctgaa |
31047076 |
T |
|
| Q |
309 |
gcttttattcttcactcactttcacgtgagagttgggaccgtgagtctaactggattggttacatcgctgttagttccgatgaacggagtagagagt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31047075 |
gcttttattcttcactcactttcacgtgagagttgggaccgtgagtctaactggattggttacatcgctgttagttccgatgaacggagtagagagt |
31046979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University