View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6071_low_5 (Length: 298)
Name: NF6071_low_5
Description: NF6071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6071_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 3000377 - 3000591
Alignment:
| Q |
18 |
tgaacaagaggaggacgagagagactcggtatgaaggagatccgaatttcgcgctgcctttgatgtatgtagctaatatgtacgagtgtttggttaatga |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| | |||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
3000377 |
tgaacaagaggaggacgagagagattcggtatgaatgagaccggaatttatgcttgcctttgatgtatgtagctaatatgtatgagagtttggttaatga |
3000476 |
T |
|
| Q |
118 |
agttaatattaggcttgcgtcgttgaatggtatccgcgacaagtctatcggtgttgctcttgaagctgctggtggtttgtatagaagacttgctaaaaaa |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | ||| |||| |||||||||||||||||||||||| ||| ||| ||||||||||||| || ||| |
|
|
| T |
3000477 |
agttaatattaggcttgcttcgttgaatggtattcacgataagtttatcggtgttgctcttgaagctgcgattggattgcatagaagacttgcgaagaaa |
3000576 |
T |
|
| Q |
218 |
tttcctaaaaaaggt |
232 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3000577 |
tttcctaaaaaaggt |
3000591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 14895784 - 14895679
Alignment:
| Q |
18 |
tgaacaagaggaggacgagagagactcggtatgaaggagatccgaatttcgcgctgcctttgatgtatgtagctaatatgtacgagtgtttggttaatga |
117 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||| || |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
14895784 |
tgaacaagaggaagacgagagagattcagtatgaaggagaccccaatttcgccttgcctttgatgtatgtagctaatatgtatgagagtttggttaatga |
14895685 |
T |
|
| Q |
118 |
agttaa |
123 |
Q |
| |
|
|||||| |
|
|
| T |
14895684 |
agttaa |
14895679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 14895526 - 14895461
Alignment:
| Q |
137 |
tcgttgaatggtatccgcgacaagtctatcggtgttgctcttgaagctgctggtggtttgtataga |
202 |
Q |
| |
|
|||||||||||||| || || ||||||||| ||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
14895526 |
tcgttgaatggtattcgtgataagtctatcagtgttgctcttaaagctgcaggtggtttgcataga |
14895461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University