View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6071_low_8 (Length: 254)
Name: NF6071_low_8
Description: NF6071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6071_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 20692234 - 20692005
Alignment:
| Q |
1 |
ttggtagcaagcattccaatggtttgagattgagaacctaaacgtcctaaccaaacaaatcaggaatctctccaactacgcgctaattccatctttattt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20692234 |
ttggtagcaagcattccaatggtt-gagattgagaacctaaacgtcctaaccaaacaaatcaggaatctctccaactacgcgctaattccatctttattt |
20692136 |
T |
|
| Q |
101 |
aatttaatttaatttnnnnnnnncgttcgaaatttccaaagtgtgtctttctttctcccactgcagttaccactctcctacttatataaccaactcttca |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20692135 |
aatttaatttaa-----aaaaaacgttcgaaatttccaaagtgcgtctttctttctcccactgcagttaccactctcctactcatataaccaactcttca |
20692041 |
T |
|
| Q |
201 |
cattttttccattctcacaaaaatccaaattttctc |
236 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
20692040 |
cattttctccattctcacaaaaatccaaatcttctc |
20692005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University