View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6072_high_9 (Length: 251)
Name: NF6072_high_9
Description: NF6072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6072_high_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 51841113 - 51841350
Alignment:
| Q |
13 |
aatatcacaaagaggagcatttgaagcgtactaagaggagtctctaaaacaagcaaattcaaattatccttagtaatgttaatgtttgcaagttaatcat |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
51841113 |
aatatcacaaagaggagtatttgaagcgtactaagaggagtctctaaaacaagcaaattcaaattatccttagtaatgctaatgtttgcaagctaatcat |
51841212 |
T |
|
| Q |
113 |
cactttgatttccttcgtgtctagtatgattgatttgcacatgtcacctcatcttcagaacctttcggatacgcttaactaaaatagggatagtcccttt |
212 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51841213 |
cactttgatt-ccttcgtgtctagtatgattgatttgcacatgtcacctcatcttcagaacctttcggatacgctcaactaaaatagggatagtcccttt |
51841311 |
T |
|
| Q |
213 |
gaaattgaaattgtcagaagtatgtcgatcaataacttt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51841312 |
gaaattgaaattgtcagaagtatgtcgatcaataacttt |
51841350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 32786150 - 32785965
Alignment:
| Q |
48 |
aggagtctctaaaacaagcaaattcaaattatccttagtaatgttaatgtttgcaagttaatcatcactttgatttccttcgtgtctagtatgattgatt |
147 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||| |||||| ||||||||| | ||||||||||||| |
|
|
| T |
32786150 |
aggagtctctaaaacaagcaagttcaaatgatccttaacaatgttaatgtttgcaaaccaatcaacacttttatttccttcacaacaagtatgattgatt |
32786051 |
T |
|
| Q |
148 |
tgcacatgtca--cctcatcttcagaacctttcggatacgcttaactaaaatagggatagtccctttgaaattgaaattgtcagaa |
231 |
Q |
| |
|
|||||||| || ||||||||| || ||| ||||| | | || ||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
32786050 |
tgcacatgccaatattcatcttcataagcttctggataggttgaaataaaataaggatagtcctgttgaaatagaaattgtcagaa |
32785965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 26381190 - 26381342
Alignment:
| Q |
20 |
caaagaggagcatttgaagcgtactaagaggagtctctaaaacaagcaaattcaaattatccttagtaatgttaatgtttgcaagttaatcatcactttg |
119 |
Q |
| |
|
|||| |||||| ||||||| |||| |||||||||| ||||||| ||||||||||| ||||||||||||| | ||||| ||||| ||||| ||||| |
|
|
| T |
26381190 |
caaataggagcttttgaagttcactaggaggagtctccaaaacaaacaaattcaaatgatccttagtaatgctgatgttagcaagccaatcaaaactttt |
26381289 |
T |
|
| Q |
120 |
atttccttcgtgtctagtatgattgatttgcacatgtcacctcatcttcagaa |
172 |
Q |
| |
|
||||||||| |||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
26381290 |
atttccttcacacgaagtatggttgatttgcacatgccatctcatcttcagaa |
26381342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 9031532 - 9031667
Alignment:
| Q |
32 |
tttgaagcgtactaagaggagtctctaaaacaagcaaattcaaattatccttagtaatgttaatgtttgcaagttaatcatcactttgatttccttcgtg |
131 |
Q |
| |
|
|||||||| |||| || ||||||| |||| |||||||||||||| ||||||| ||||| ||||||||||||| ||||| ||||| ||||||||| | |
|
|
| T |
9031532 |
tttgaagctcactaggaagagtctccaaaaaaagcaaattcaaatgatccttaataatgctaatgtttgcaagccaatcaacacttctatttccttcacg |
9031631 |
T |
|
| Q |
132 |
tctagtatgattgatttgcacatgtcacctcatctt |
167 |
Q |
| |
|
| |||||| || |||| ||||||| | |||||||| |
|
|
| T |
9031632 |
ttaagtatggttaattttcacatgttatctcatctt |
9031667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 1636133 - 1636048
Alignment:
| Q |
160 |
ctcatcttcagaacctttcggatacgcttaactaaaatagggatagtccctttgaaattgaaattgtcagaagt-atgtcgatcaa |
244 |
Q |
| |
|
||||||||||| | ||| |||||||| | |||||||| ||| ||| |||| ||||| |||||||| |||||| | ||||||||||| |
|
|
| T |
1636133 |
ctcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaa |
1636048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 23410135 - 23410058
Alignment:
| Q |
93 |
aatgtttgcaagttaatcatcactttgatttccttcgtgtctagtatgattgatttgcacatgtcacctcatcttcagaa |
172 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||| |||| | |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
23410135 |
aatgtttgcaagtcaatcaacacttttatttctttcgcgcaaagtatggttgatttg--catgtcacctcatcttcagaa |
23410058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 23949833 - 23949748
Alignment:
| Q |
160 |
ctcatcttcagaacctttcggatacgcttaactaaaatagggatagtccctttgaaattgaaattgtcagaagt-atgtcgatcaa |
244 |
Q |
| |
|
||||||||||| | ||| |||||||| | |||||||| ||| ||| |||| ||||| |||||||| |||||| | ||||||||||| |
|
|
| T |
23949833 |
ctcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaa |
23949748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University