View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6072_low_1 (Length: 834)
Name: NF6072_low_1
Description: NF6072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6072_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 789; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 18 - 826
Target Start/End: Original strand, 40960318 - 40961125
Alignment:
| Q |
18 |
aaacaaacaccactaaattacctaagcatacaatgtaaaccatttgtaaaagaggcaaggtggacccgaattcttccccaaaaacaaactccaagacaaa |
117 |
Q |
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| T |
40960318 |
aaacaaacaccactaaattacctaagcatacaatgtaaaccattcgtaaaagaggcaaggtggacccgaattcttccc-aaaaacaaactccaagacaaa |
40960416 |
T |
|
| Q |
118 |
ctttttatcgcctctacaacctccggcactttagatgctttaaaaccgaagattttgtcgttccttgccttccaagtgttggatagaagtagtaaaggaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960417 |
ctttttatcgcctctacaacctccggcactttagatgctttaaaaccgaagattttgtcgttccttgccttccaagtgttggatagaagtagtaaaggaa |
40960516 |
T |
|
| Q |
218 |
ttgttggtacatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtaccgcaaaaatgctagatgttttcga |
317 |
Q |
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| T |
40960517 |
ttgttggtacatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtaccgcaaaaatgctagatgttttcga |
40960616 |
T |
|
| Q |
318 |
aagcctcctatgctgtttggtttttaactgatgcatatagcttcatgtaacttttgaaagattaatctggctgttgattccgtggttgtttactaaatat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960617 |
aagcctcctatgctgtttggtttttaactgatgcatatagcttcatgtaacttttgaaagattaatctggctgttgattccgtggttgtttactaaatat |
40960716 |
T |
|
| Q |
418 |
ttggactccaggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatctt |
517 |
Q |
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| T |
40960717 |
ttggactccaggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatctt |
40960816 |
T |
|
| Q |
518 |
atgttacctattaaattgtgtgaatattatcgactaactgttagcttttcttctgtgaaacagatgacagatgctagttgcaaactttgcacagagcgta |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960817 |
atgttacctattaaattgtgtgaatattatcgactaactgttagcttttcttctgtgaaacagatgacagatgctagttgcaaactttgcacagagcgta |
40960916 |
T |
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| Q |
618 |
aagtgggtgtaagggatattattcgcgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgatatttaattaaaatttaaaaactcat |
717 |
Q |
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| T |
40960917 |
aagtgggtgtaagggatattattcgtgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgatatttaattaaaatttaaaaactcat |
40961016 |
T |
|
| Q |
718 |
ctaatgcacttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcattcttggtctgcttcttgtgatgcggt |
817 |
Q |
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| T |
40961017 |
ctaatgcacttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcattcttggtctgcctcttgtgatgcggt |
40961116 |
T |
|
| Q |
818 |
gtctgtgct |
826 |
Q |
| |
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||||||||| |
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| T |
40961117 |
gtctgtgct |
40961125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 394 - 826
Target Start/End: Original strand, 40947504 - 40947931
Alignment:
| Q |
394 |
attccgtggttgtttactaaatatttggactccaggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcac |
493 |
Q |
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|||| |||||| |||||| ||||||| | ||||||| |||||||||||||||||| || ||||| ||||||||||||| | |||||||||||||||||| |
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| T |
40947504 |
attctgtggttatttactggatatttgaattccaggagggtttgactgctgaggaaatatccaaggatgagcccgatgagccacaacacatgcaggtcac |
40947603 |
T |
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| Q |
494 |
tttttgctccactccaataatcttatgttacctattaaattgtgtgaatattatcgactaactgttagcttttcttct-gtgaaacagatgacagatgct |
592 |
Q |
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| T |
40947604 |
tttttgctccatcccaacaattttatgttatctgttaaattgtgtgaatattatttactgaatgttggcttttctactggtgaaacagatgacagatgct |
40947703 |
T |
|
| Q |
593 |
agttgcaaactttgcacagagcgtaaagtgggtgtaagggatattattcgcgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgat |
692 |
Q |
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| T |
40947704 |
cgctgcaaaatttgcgatgagcaaaaagttggcgtgagggatattatccgtgcaggatatgctgaccgatatatggtcagcgccttaatgctttactgat |
40947803 |
T |
|
| Q |
693 |
atttaattaaaatttaaaaactcatctaatgcacttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcatt |
792 |
Q |
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| T |
40947804 |
atttca--aatat---caaattcatctcctgtagtttttgtgacttcgg-tttaatttttgctctgcttgttcagctggaatgcatagcttgtggtcatt |
40947897 |
T |
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| Q |
793 |
cttggtctgcttcttgtgatgcggtgtctgtgct |
826 |
Q |
| |
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| T |
40947898 |
cctggtctgcctctcgtgatgcggtgtctgtgct |
40947931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 487
Target Start/End: Complemental strand, 2663057 - 2662996
Alignment:
| Q |
426 |
caggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgca |
487 |
Q |
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| T |
2663057 |
caggagggtttgactgctgaggaaaaaaccaagaaggagcctgatgagaaacaacacatgca |
2662996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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