View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6072_low_10 (Length: 251)
Name: NF6072_low_10
Description: NF6072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6072_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 51841472 - 51841637
Alignment:
| Q |
1 |
taatgcatctatcatctgaatcacaaaagagacccccacattcgacaatctttcccc-atctttgcatgcatcattactattgagcttgattcaaccttc |
99 |
Q |
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| T |
51841472 |
taatgcatctatcatctgaatcacaaaaaagacccccacattcgacaatctctcccccatctttgcatgcatcattactattgagct-gattcaaccttc |
51841570 |
T |
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| Q |
100 |
ttgtggtcgcttccatcctaatggatattccttcaacttagtggacaaaaaaggaacaataatatca |
166 |
Q |
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| T |
51841571 |
ttgtggtcgcttccatcctaatggatattccttcaacttagtggacaaaaaaggaacaataatatca |
51841637 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 28395686 - 28395740
Alignment:
| Q |
62 |
ttgcatgcatcattactattgagcttgattcaaccttcttgtggtcgcttccatc |
116 |
Q |
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| T |
28395686 |
ttgcatgcgccatcactattgagcttgatccaaccttcttgtggttgcttccatc |
28395740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 25713325 - 25713268
Alignment:
| Q |
62 |
ttgcatgcatcattactattgagcttgattcaaccttcttgtggtcgcttccatccta |
119 |
Q |
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||||| ||||||| ||| ||||||||||| ||||||||||| || |||||||| |||| |
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| T |
25713325 |
ttgcaagcatcatcactgttgagcttgatccaaccttcttgaggccgcttccaaccta |
25713268 |
T |
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