View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6072_low_14 (Length: 205)

Name: NF6072_low_14
Description: NF6072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6072_low_14
NF6072_low_14
[»] chr5 (5 HSPs)
chr5 (82-183)||(35066401-35066502)
chr5 (13-57)||(35066332-35066376)
chr5 (82-140)||(36291937-36291994)
chr5 (82-118)||(1050656-1050692)
chr5 (82-130)||(43069433-43069480)
[»] chr6 (1 HSPs)
chr6 (82-130)||(29743861-29743908)
[»] chr4 (1 HSPs)
chr4 (82-130)||(10352427-10352474)
[»] chr3 (1 HSPs)
chr3 (82-130)||(19565044-19565091)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 35066401 - 35066502
Alignment:
Q  82 accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactcatgattcaaatcactacaagaaaaactgttatttaccggagacatatgtgag 181  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35066401 accaatacatgcaaaattgcaattttgttccgaataaagcgtatactcatgattcaaatcactacaagaaaaactgttatttgccggagacatatgtgag 35066500  T
Q  182 gg 183  Q
    ||    
T  35066501 gg 35066502  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 35066332 - 35066376
Alignment:
Q  13 agagagagatataaaaatacataaaaaggattgcatttcaaagac 57  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  35066332 agagagatatataaaaatacataaaaaggattgcatttcaaagac 35066376  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 36291994 - 36291937
Alignment:
Q  82 accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactcatgattcaaat 140  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||||||| | ||||||    
T  36291994 accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactcataagtcaaat 36291937  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 1050692 - 1050656
Alignment:
Q  82 accaatacatgcaaaattgcaattttgttccgagtaa 118  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  1050692 accaaaacatgcaaaattgcaattttgttcggagtaa 1050656  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 43069480 - 43069433
Alignment:
Q  82 accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca 130  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||||||    
T  43069480 accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactca 43069433  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 29743908 - 29743861
Alignment:
Q  82 accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca 130  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||||||    
T  29743908 accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactca 29743861  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 10352427 - 10352474
Alignment:
Q  82 accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca 130  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||||||    
T  10352427 accaaaacatgcaaaattgaaattttgttccgtgt-aagtgtatactca 10352474  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 19565044 - 19565091
Alignment:
Q  82 accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca 130  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||||||    
T  19565044 accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactca 19565091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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