View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6072_low_3 (Length: 436)
Name: NF6072_low_3
Description: NF6072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6072_low_3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 51591273 - 51591708
Alignment:
| Q |
1 |
caatattcctcctaaacccgaaccgtggtgtcgtgtcccctctcaccgtggcgataacttcctcgttgctggcttcgagcaatggatacagcagctcgca |
100 |
Q |
| |
|
||||| |||| || || ||||||| ||| |||||| |||||| ||| ||||||| ||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
51591273 |
caataatccttctgaatccgaacctgggtttcgtgttccctctaaccttggcgattacttcctcggtgctggcttcgagcaattgattcagcagctcgca |
51591372 |
T |
|
| Q |
101 |
gagaataatcctaaccgttacggaacaccgccggcatcgaaagaggctgttaagaatcttccaacggtaactgttgatgatgcgatgttgagctcggagt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51591373 |
gagaatgatcctaaccgttacggaacaccgccggcatcgaaagaggctgttaagaatcttccaacggtaactgttgatgatgcgttgttgagctcggagt |
51591472 |
T |
|
| Q |
201 |
tgaatcaatgtgctgtttgtcaggatgagtttgagaaaggtatgcaggtgaagcaaatgccttgtaagcatgtttatcatgatgattgcttgcttccatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51591473 |
tgaatcaatgtgctgtttgtcaggatgagtttgagaaaggtatgcaggtgaagcaaatgccttgtaagcatgtttatcatgatgattgcttgcttccatg |
51591572 |
T |
|
| Q |
301 |
gcttgaattgcataactcttgccctgtttgtcgacatgaattgcctactgatgatgctgattatgagaaccggggtagggatgataacagtggtgatggg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51591573 |
gcttgaattgcataactcttgccctgtttgtcgacatgaattgcctactgatgatgctgattatgagaaccggggtagggatgataacagtggtgatggg |
51591672 |
T |
|
| Q |
401 |
ttgaggtctgttgttggtggtaacagtactggtggt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
51591673 |
ttgaggtctgttgttggtggtaacagtactggtggt |
51591708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 367
Target Start/End: Original strand, 29164836 - 29164953
Alignment:
| Q |
250 |
gaagcaaatgccttgtaagcatgtttatcatgatgattgcttgcttccatggcttgaattgcataactcttgccctgtttgtcgacatgaattgcctact |
349 |
Q |
| |
|
|||||| ||||| |||||||| | |||||||||||||| | | || ||| | ||||||||||| ||||| ||||||||||| ||| |||||||| |
|
|
| T |
29164836 |
gaagcagatgccgtgtaagcacatatatcatgatgattgtatcttgccgtggttggaattgcataattcttgtcctgtttgtcgttttgagttgcctaca |
29164935 |
T |
|
| Q |
350 |
gatgatgctgattatgag |
367 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
29164936 |
gatgatcctgattatgag |
29164953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University