View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6072_low_5 (Length: 408)
Name: NF6072_low_5
Description: NF6072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6072_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 2304201 - 2303825
Alignment:
| Q |
1 |
acatgttaaataaagattctatctctaacggtgtaatccaattgttaaagagttgaggcattaaatgagtttaagaagaaggtcgagagtttaatccctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| |
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| T |
2304201 |
acatgttaaataaagattctatctctaacggtgtaatccaattgttaatgagttgaggcattgaatgagtttaagaaggaggtcgagagtttagtccctc |
2304102 |
T |
|
| Q |
101 |
ataatcacatttgacttaatagga----catgaagtatcacaactcaaacatattttctcttcccaccaactattatataaaacagagtaaaagtggatg |
196 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2304101 |
ataatcacatttgacttaataggattaacatgaagtatcacaactcaaatatattttctcttcccaccaactattatataaaacagagtaaaagtggatg |
2304002 |
T |
|
| Q |
197 |
tcattattcaaagttaagaaccaagatatttaaatcaacataatataagtcatatatatttgtattatgtaatatctttaaatttgaatcatatatagga |
296 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
2304001 |
tcattattcaaagttaagaaccaagatatttaaatcaacataatataagtcatatatatttctattatgtaatatctttaaatttgaatcatatat--ga |
2303904 |
T |
|
| Q |
297 |
gtattacatgccgatttgaatcatataggtgcataattgcaatccttcattcactctaatctaaaaccagtaaaagatt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
2303903 |
gtattacatgccgatttgaatcatataggtgcataattgcaatccttcattcattctaatctaaaaccagcaaaagatt |
2303825 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 83 - 308
Target Start/End: Original strand, 20911143 - 20911372
Alignment:
| Q |
83 |
tcgagagtttaatccctcataatcacatttgacttaatagga----catgaagtatcacaactcaaacatattttctcttcccac--caactattatata |
176 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || | |||| |||||||||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
20911143 |
tcgagagtttaatccctcttaatcacatttgacttaatatgattaacttgaaatatcacaactcaaatataatttctcttcccacaccaactattatata |
20911242 |
T |
|
| Q |
177 |
aaacagagtaaaagtggatgtcattattcaaagttaagaaccaagatatttaaatcaacataatataagtcatatatatttgtattatgtaatatcttta |
276 |
Q |
| |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
20911243 |
taacggagtaaaagtggatgtcattattaaaagttaagaaccaagatatttaaatcaacataatataagtcatatatatttctattgtgtaatatcttta |
20911342 |
T |
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| Q |
277 |
aatttgaatcatatataggagtattacatgcc |
308 |
Q |
| |
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|||||||||| ||| |||||||||||||||| |
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| T |
20911343 |
aatttgaatc--atacaggagtattacatgcc |
20911372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 83 - 308
Target Start/End: Original strand, 20925591 - 20925820
Alignment:
| Q |
83 |
tcgagagtttaatccctcataatcacatttgacttaatagga----catgaagtatcacaactcaaacatattttctcttcccac--caactattatata |
176 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || | |||| |||||||||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
20925591 |
tcgagagtttaatccctcttaatcacatttgacttaatatgattaacttgaaatatcacaactcaaatataatttctcttcccacaccaactattatata |
20925690 |
T |
|
| Q |
177 |
aaacagagtaaaagtggatgtcattattcaaagttaagaaccaagatatttaaatcaacataatataagtcatatatatttgtattatgtaatatcttta |
276 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
20925691 |
taacggagtaaaagtggatgtcattattaaaagttaagaaccaagatatttaaatcaacataatataagtcatatatatttctattgtgtaatatcttta |
20925790 |
T |
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| Q |
277 |
aatttgaatcatatataggagtattacatgcc |
308 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |
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| T |
20925791 |
aatttgaatc--atacaggagtattacatgcc |
20925820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 20913941 - 20913987
Alignment:
| Q |
322 |
taggtgcataattgcaatccttcattcactctaatctaaaaccagta |
368 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||| ||||||||||| |
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|
| T |
20913941 |
taggtgcataattgtaatccttcgttcattctaatataaaaccagta |
20913987 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 140 - 310
Target Start/End: Complemental strand, 6701752 - 6701586
Alignment:
| Q |
140 |
ctcaaacatattttctcttcccaccaactattatataaaacagagtaaaagtggatgtcattattcaaagttaagaaccaagatatttaaatcaacataa |
239 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
6701752 |
ctcaaatatattttctcttcctgccaactattatataa--cggagtaaaggtggatgtcattattaaaagttaagaaccaacatatttaaatcaacataa |
6701655 |
T |
|
| Q |
240 |
tataagtcatatatatttgtattatgtaatatctttaaatttgaatcatatataggagtattacatgccga |
310 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6701654 |
tataagtcatatatatttctagtatataatatctttaaatttgaatca--tataggagtattacatgccga |
6701586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 6700006 - 6699960
Alignment:
| Q |
322 |
taggtgcataattgcaatccttcattcactctaatctaaaaccagta |
368 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
6700006 |
taggtgcataattgcaagccttcattcattctaatctaaaaccagta |
6699960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8170809 - 8170714
Alignment:
| Q |
1 |
acatgttaaataaagattctatctctaacggtgtaatccaattgttaaagagttgaggcattaaatgagtttaagaagaaggtcgagagtttaatc |
96 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||||| |||||| ||||||||||||||||| ||||||||| ||||| ||||||||||| |
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| T |
8170809 |
acatgttaaataaagattctatctctgactgcgtaatccaattattaaagggttgaggcattaaatgaatttaagaaggaggtccagagtttaatc |
8170714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 8170575 - 8170525
Alignment:
| Q |
124 |
acatgaagtatcacaactcaaacatattttctcttcccaccaactattata |
174 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8170575 |
acatgaagtatcaaaactcaaatatattttctcttcccaccaactattata |
8170525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 1143635 - 1143562
Alignment:
| Q |
214 |
gaaccaagatatttaaatcaacataatataagtcatatatatttgtattatgtaatatctttaaatttgaatcata |
289 |
Q |
| |
|
||||||||| |||| ||||| ||||| ||||| ||| | | || |||||||||||||||| |||||||||||||| |
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| T |
1143635 |
gaaccaagaaatttgaatcatcataagataagacatgtgt--ttctattatgtaatatcttcaaatttgaatcata |
1143562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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