View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6074_high_1 (Length: 967)

Name: NF6074_high_1
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6074_high_1
NF6074_high_1
[»] chr2 (8 HSPs)
chr2 (126-491)||(13432017-13432394)
chr2 (512-679)||(13434892-13435059)
chr2 (781-950)||(13435141-13435305)
chr2 (521-681)||(20588276-20588436)
chr2 (735-807)||(20588153-20588225)
chr2 (608-674)||(20587208-20587274)
chr2 (732-782)||(20587326-20587376)
chr2 (29-60)||(13431919-13431950)
[»] chr1 (7 HSPs)
chr1 (828-952)||(31028062-31028184)
chr1 (828-952)||(31035024-31035146)
chr1 (521-681)||(46651443-46651603)
chr1 (521-681)||(46652598-46652758)
chr1 (735-807)||(46651654-46651726)
chr1 (732-782)||(46652503-46652553)
chr1 (752-792)||(46604766-46604806)
[»] scaffold0524 (4 HSPs)
scaffold0524 (521-681)||(8886-9046)
scaffold0524 (613-681)||(7852-7920)
scaffold0524 (732-782)||(7965-8015)
scaffold0524 (735-776)||(8797-8838)
[»] scaffold0472 (4 HSPs)
scaffold0472 (521-681)||(9102-9262)
scaffold0472 (524-681)||(10263-10420)
scaffold0472 (735-807)||(9319-9391)
scaffold0472 (732-782)||(10168-10218)
[»] chr8 (7 HSPs)
chr8 (521-676)||(35506750-35506905)
chr8 (735-798)||(35505819-35505882)
chr8 (608-670)||(35505691-35505753)
chr8 (523-585)||(35750203-35750265)
chr8 (752-792)||(45448181-45448221)
chr8 (732-782)||(35506652-35506702)
chr8 (613-674)||(35750693-35750753)
[»] chr5 (7 HSPs)
chr5 (521-681)||(42775502-42775662)
chr5 (512-681)||(37986316-37986485)
chr5 (608-681)||(42776635-42776708)
chr5 (744-792)||(33738061-33738109)
chr5 (732-782)||(42775707-42775757)
chr5 (754-791)||(12890565-12890602)
chr5 (735-776)||(42776543-42776584)
[»] chr4 (10 HSPs)
chr4 (521-673)||(39929179-39929331)
chr4 (555-673)||(39928049-39928167)
chr4 (735-807)||(39928227-39928299)
chr4 (608-673)||(46253144-46253209)
chr4 (613-676)||(5236409-5236472)
chr4 (732-786)||(5236520-5236574)
chr4 (634-681)||(5236904-5236951)
chr4 (732-782)||(39929076-39929126)
chr4 (732-774)||(46253263-46253305)
chr4 (746-791)||(4241359-4241404)
[»] chr7 (12 HSPs)
chr7 (555-673)||(43545458-43545576)
chr7 (608-681)||(25008251-25008324)
chr7 (608-681)||(28848723-28848796)
chr7 (608-681)||(28849795-28849868)
chr7 (521-681)||(25009302-25009462)
chr7 (608-681)||(43546547-43546620)
chr7 (754-807)||(28849668-28849721)
chr7 (732-782)||(28848841-28848891)
chr7 (732-782)||(25008370-25008420)
chr7 (732-782)||(43546452-43546502)
chr7 (735-776)||(25009207-25009248)
chr7 (735-776)||(43545638-43545679)
[»] chr3 (9 HSPs)
chr3 (608-681)||(8391560-8391633)
chr3 (608-681)||(45982626-45982699)
chr3 (735-807)||(8392499-8392571)
chr3 (521-681)||(8392620-8392780)
chr3 (521-672)||(45981489-45981640)
chr3 (732-782)||(8391678-8391728)
chr3 (732-782)||(45981694-45981744)
chr3 (634-676)||(46725112-46725154)
chr3 (754-791)||(33551913-33551950)
[»] scaffold0018 (2 HSPs)
scaffold0018 (608-681)||(193760-193833)
scaffold0018 (732-782)||(193878-193928)
[»] scaffold0369 (2 HSPs)
scaffold0369 (608-681)||(8096-8170)
scaffold0369 (735-776)||(8007-8048)
[»] chr6 (1 HSPs)
chr6 (733-786)||(9410202-9410255)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 126 - 491
Target Start/End: Original strand, 13432017 - 13432394
Alignment:
Q  126 atattgtagtaaaggtttctgtttttcatacaaatttttatgataacttatatcgtaaaaatatcttctaaaaaataaagcaaacgaatgctcctcaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13432017 atattgtagtaaaggtttctgtttttcatacaaatttttatgacaatttatattgtaaaaatatcttctaaaaaataaagcaaacgaatgctcctcaatt 13432116  T
Q  226 gtacggtttgtggaccttcatattgaagcataacccagagccacgtgcaaggacagggagggcttttagattggaccactgcaaca------------tg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            ||    
T  13432117 gtacggtttgtggaccttcatattgaagcataacccagagccacgtgcaaggatagggagggcttttagattggaccactgcaacatgaaaatcaaattg 13432216  T
Q  314 gctcattgtgacagcgttactatactgtgccttaatcccataaatgtccatgtcaagacttggttgctttcgttactacaaaggaagccataaacaaaat 413  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13432217 gctcattctgacagtgttactatacagtgccttaatcccataaatgtccaggtcaagacttggttgctttcgttactataaaggaagccataaacaaaat 13432316  T
Q  414 gatggaaatgtgtattatttattgacttaaatatgtaaaaacgttcctttaagttggcgtgtttttacgtttcatctt 491  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||  ||||||||    
T  13432317 gatggaaatgtgtattatttattgacttaaatatgtaaaaatgttcctttaagttggtgtgtttttacaattcatctt 13432394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 512 - 679
Target Start/End: Original strand, 13434892 - 13435059
Alignment:
Q  512 aaactatcattgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaag 611  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||| |||||||| ||||    
T  13434892 aaactatcattgtaagttgctaaccgtttgtaattattatcttccgttaactcctattacaaaaacgttgtggtcgtagacatagagacatatgacgaag 13434991  T
Q  612 tgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaa 679  Q
     |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||    
T  13434992 ggtgagttggcaaaagcatgtttatgtgtcaagagaaatgatgagcggctagaaaggagagatcagaa 13435059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 781 - 950
Target Start/End: Original strand, 13435141 - 13435305
Alignment:
Q  781 tttctttatctccaaccccaattaaaactctacacttcgatttttaattgtttttgatacctcttgtgttgtagagttaattgtggataattcactgtta 880  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || ||||||||        
T  13435141 tttcttcatctccaaccccaattaaaactctacacttcgatttttaattgtttttgatacctcttgtgttgtagagctaattgcagacaattcact---- 13435236  T
Q  881 ccttacggcttaaacatgattgttaactacacactcacaacaacaattcttcaatcgagtgaaagtcttt 950  Q
      ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13435237 -attatggcttaaacatgattgttaactacacactcacaacaacaattcttcaatcgagtgaaagtcttt 13435305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 521 - 681
Target Start/End: Complemental strand, 20588436 - 20588276
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||||| || |||||| |||| ||  || |||||||||||  ||||||||||||| ||||   |||| |||| |||  ||  |||||||||||||    
T  20588436 ttgtaagttgccaatcgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacgtagacacacgtggtgaagtgtgagttg 20588337  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  20588336 gcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaaggagggaccaaaacc 20588276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 735 - 807
Target Start/End: Complemental strand, 20588225 - 20588153
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacctcaatttctttatctccaaccccaattaaaa 807  Q
    |||||||| ||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  20588225 gttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctccaaccccagttaaaa 20588153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 608 - 674
Target Start/End: Original strand, 20587208 - 20587274
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggac 674  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||| || ||||||||||||||    
T  20587208 gaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggac 20587274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 732 - 782
Target Start/End: Original strand, 20587326 - 20587376
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||| |||||    
T  20587326 tttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 20587376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 13431919 - 13431950
Alignment:
Q  29 ttgtaggaaaaaagcaacccttttatgacata 60  Q
    ||||||||||||||||||||||||||||||||    
T  13431919 ttgtaggaaaaaagcaacccttttatgacata 13431950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 828 - 952
Target Start/End: Complemental strand, 31028184 - 31028062
Alignment:
Q  828 ttgtttttgatacctcttgtgttgtagagttaattgtggataattcactgttaccttacggcttaaacatgattgttaactacacactc---acaacaac 924  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||||| |     ||||||||||||||||||||||||||||||||||   ||||||||    
T  31028184 ttgtctttgatacctcatgtgttgtggagttaattgtggacaattcacgg-----ttacggcttaaacatgattgttaactacacactcacaacaacaac 31028090  T
Q  925 aattcttcaatcgagtgaaagtctttct 952  Q
    || |||||||||||||||||| ||||||    
T  31028089 aaatcttcaatcgagtgaaagcctttct 31028062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 828 - 952
Target Start/End: Complemental strand, 31035146 - 31035024
Alignment:
Q  828 ttgtttttgatacctcttgtgttgtagagttaattgtggataattcactgttaccttacggcttaaacatgattgttaactacacactcacaaca---ac 924  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||||| |||||     | ||||||||||||||||||||||||||||||||||   ||    
T  31035146 ttgtctttgatacctcatgtgttgtggagttaattgtggacaattcacggttac-----gacttaaacatgattgttaactacacactcacaacaacaac 31035052  T
Q  925 aattcttcaatcgagtgaaagtctttct 952  Q
    || |||||||||||||||||| ||||||    
T  31035051 aaatcttcaatcgagtgaaagcctttct 31035024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 521 - 681
Target Start/End: Original strand, 46651443 - 46651603
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||||| || |||||| ||||  |  || |||||||||||  ||||||||||||| ||||   ||||  ||| |||  ||  |||||||||||||    
T  46651443 ttgtaagttgccaatcgtttgcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtggtgaagtgtgagttg 46651542  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  46651543 gcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaaggagggaccaaaacc 46651603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 521 - 681
Target Start/End: Complemental strand, 46652758 - 46652598
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||| ||| ||||||| |||| ||  || |||||||||||  ||||||||||||||||||   ||||  ||| |||   |  |||||||||||||    
T  46652758 ttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttatggtggcagacggagacacacgcggcgaagtgtgagttg 46652659  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||| ||  ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  46652658 gcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaacc 46652598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 735 - 807
Target Start/End: Original strand, 46651654 - 46651726
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacctcaatttctttatctccaaccccaattaaaa 807  Q
    |||||||| ||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  46651654 gttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctccaaccccagttaaaa 46651726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 732 - 782
Target Start/End: Complemental strand, 46652553 - 46652503
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||| |||||    
T  46652553 tttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 46652503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 752 - 792
Target Start/End: Original strand, 46604766 - 46604806
Alignment:
Q  752 tgttttttcttcttcatctccaacctcaatttctttatctc 792  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  46604766 tgttttttcttcttcatctccaacctcattttcttcatctc 46604806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 521 - 681
Target Start/End: Complemental strand, 9046 - 8886
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||||| || |||||| |||| ||  || |||||||||||  ||||||||||||| ||||  |||||  ||| |||  ||  |||||||||||||    
T  9046 ttgtaagttgccaatcgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggtagacggagacacacgtggtgaagtgtgagttg 8947  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||| |   ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  8946 gcaaaagctttgttatgtgtcaagagagatgatgagtggctagaaaggagggaccaaaacc 8886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 613 - 681
Target Start/End: Original strand, 7852 - 7920
Alignment:
Q  613 gtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||||||||||| ||  ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  7852 gtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaacc 7920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 732 - 782
Target Start/End: Original strand, 7965 - 8015
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | | ||||||||||||||||||||| |||||    
T  7965 tttgttcattcctctccctctatgttttcttcttcatctccaaccccaatt 8015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 776
Target Start/End: Complemental strand, 8838 - 8797
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacc 776  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  8838 gttcattcctctccctctattttttcttcttcatctccaacc 8797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 57; Significance: 3e-23; HSPs: 4)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 521 - 681
Target Start/End: Original strand, 9102 - 9262
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||||| || |||||| |||| ||  || |||||||||||  ||||||||||||| ||||   ||||| ||| |||  ||  |||||||||||||    
T  9102 ttgtaagttgccaatcgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacagagacacacgtggtgaagtgtgagttg 9201  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||| ||  ||||||||||||||||||||||  ||||||||||||| ||||| ||||    
T  9202 gcaaaagcttgcttatgtgtcaagagagatgatgaatggctagaaaggagagaccaaaacc 9262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 524 - 681
Target Start/End: Complemental strand, 10420 - 10263
Alignment:
Q  524 taagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttggca 623  Q
    |||||| ||| ||||||| |||| ||  || |||||||||||  ||||||||||||| ||||   ||||  ||| |||  ||  ||||||||||||| ||    
T  10420 taagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtggcgaagtgtgagttgaca 10321  T
Q  624 aaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||| ||  ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  10320 aaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaacc 10263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 735 - 807
Target Start/End: Original strand, 9319 - 9391
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacctcaatttctttatctccaaccccaattaaaa 807  Q
    |||||||| ||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||    
T  9319 gttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctccaaccctagttaaaa 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 732 - 782
Target Start/End: Complemental strand, 10218 - 10168
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  10218 tttgttcattcctctccctctattttttcttcttcatcttcaaccccaatt 10168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 1e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 521 - 676
Target Start/End: Complemental strand, 35506905 - 35506750
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||| ||| ||||||| |||| ||  || |||||||||||  ||||||||||||| ||||   ||||  ||| ||| | |  |||||||||||||    
T  35506905 ttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacacggcgaagtgtgagttg 35506806  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggacca 676  Q
    |||||||| ||  ||||||||||||||||||||||| || ||||||||||||||||    
T  35506805 gcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggacca 35506750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 735 - 798
Target Start/End: Original strand, 35505819 - 35505882
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacctcaatttctttatctccaaccc 798  Q
    |||||||| ||||||| | ||||||||||||||||||||||| ||||||||| |||||||||||    
T  35505819 gttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctccaaccc 35505882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 35505691 - 35505753
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggag 670  Q
    ||||||||||||||||||||| |   ||||| |||| |||||||||||| |||||||||||||    
T  35505691 gaagtgtgagttggcaaaagctttcttatgtttcaaaagagatgatgagtggctagaaaggag 35505753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 585
Target Start/End: Original strand, 35750203 - 35750265
Alignment:
Q  523 gtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggt 585  Q
    |||||||| |||||||||| ||||||| ||| ||||||| ||| |||||||||||||| ||||    
T  35750203 gtaagttgttaaccgtttgcaattagtctctcccgttaattcccattacaaaaacgttgtggt 35750265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 752 - 792
Target Start/End: Complemental strand, 45448221 - 45448181
Alignment:
Q  752 tgttttttcttcttcatctccaacctcaatttctttatctc 792  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  45448221 tgttttttcttcttcatctccaacctcattttcttcatctc 45448181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 732 - 782
Target Start/End: Complemental strand, 35506702 - 35506652
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | ||||| ||||||||||||||||| |||||    
T  35506702 tttgttcattcctctccctctatttttccttcttcatctccaaccccaatt 35506652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 674
Target Start/End: Complemental strand, 35750753 - 35750693
Alignment:
Q  613 gtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggac 674  Q
    ||||||||||||| |||||  ||||||||||||||| | ||||| ||||| |||||||||||    
T  35750753 gtgagttggcaaa-gcatgcttatgtgtcaagagagctaatgagtggctaaaaaggagggac 35750693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 7e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 521 - 681
Target Start/End: Original strand, 42775502 - 42775662
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||| ||| ||||||| |||| ||  || |||||||||||  ||||||||||||| ||||   ||||  ||| |||   |  |||||||||||||    
T  42775502 ttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtgagttg 42775601  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||| ||  ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  42775602 gcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaacc 42775662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 512 - 681
Target Start/End: Complemental strand, 37986485 - 37986316
Alignment:
Q  512 aaactatcattgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaag 611  Q
    |||| |||||||||||||| |||| ||||| ||| |||  || |  ||||||||   |||||||||||| ||||   ||||| ||| ||| |||  ||||    
T  37986485 aaaccatcattgtaagttgttaactgtttgcaatcagtccctccacttaactcccgctacaaaaacgttgtggtggcagacagagacacacatggcgaag 37986386  T
Q  612 tgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
     |||||||| ||||| || |  ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  37986385 ggtgagttgacaaaaacaggcttatatgtcaagagagatgatgagtggctagaaaggagggaccagaacc 37986316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 608 - 681
Target Start/End: Complemental strand, 42776708 - 42776635
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  42776708 gaagtctgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaaggagagaccaaaacc 42776635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 744 - 792
Target Start/End: Original strand, 33738061 - 33738109
Alignment:
Q  744 tctccctttgttttttcttcttcatctccaacctcaatttctttatctc 792  Q
    |||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  33738061 tctccctttgtttttttttctttatctccaacctcaatttcttcatctc 33738109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 732 - 782
Target Start/End: Original strand, 42775707 - 42775757
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | ||||||||||||||| ||||||| |||||    
T  42775707 tttgttcattcctctccctctattttttcttcttcatatccaaccccaatt 42775757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 791
Target Start/End: Original strand, 12890565 - 12890602
Alignment:
Q  754 ttttttcttcttcatctccaacctcaatttctttatct 791  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  12890565 ttttttcttcttcatctccaaccccaatttcttcatct 12890602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 776
Target Start/End: Complemental strand, 42776584 - 42776543
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacc 776  Q
    |||||||| |||||||||  ||||||||||||||||||||||    
T  42776584 gttcattcctctccctttactttttcttcttcatctccaacc 42776543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 7e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 521 - 673
Target Start/End: Complemental strand, 39929331 - 39929179
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||| ||| ||||||| |||| ||  || |||||||||||  ||||||||||||||||||   ||||  ||| |||   |  |||||||||||||    
T  39929331 ttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttatggtggcagacggagacacacgcggcgaagtgtgagttg 39929232  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggaggga 673  Q
    |||||||| ||  ||||||||||||||||||||||| || |||||||||||||    
T  39929231 gcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggaggga 39929179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 555 - 673
Target Start/End: Original strand, 39928049 - 39928167
Alignment:
Q  555 ccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatg 654  Q
    |||||||||||  ||||||||||||| ||||   ||||  ||| |||| ||  ||||||||||||||||||||| ||  |||||||||||||||||||||    
T  39928049 ccgttaactcccgttacaaaaacgttgtggtggcagacggagacacatgtggtgaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatg 39928148  T
Q  655 agcggctagaaaggaggga 673  Q
     | ||||||||||||||||    
T  39928149 cgtggctagaaaggaggga 39928167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 735 - 807
Target Start/End: Original strand, 39928227 - 39928299
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacctcaatttctttatctccaaccccaattaaaa 807  Q
    |||||||| ||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  39928227 gttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctccaaccccagttaaaa 39928299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 608 - 673
Target Start/End: Original strand, 46253144 - 46253209
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggaggga 673  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||| || |||||||||||||    
T  46253144 gaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggaggga 46253209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 613 - 676
Target Start/End: Original strand, 5236409 - 5236472
Alignment:
Q  613 gtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggacca 676  Q
    |||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||    
T  5236409 gtgagttggcaaaagcagaattatgtgtcaagagagatgatgagtggctagaaaggagggacca 5236472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 732 - 786
Target Start/End: Original strand, 5236520 - 5236574
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatttctt 786  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  5236520 tttgttcattcctctccctttgttttttcttcttcatctccaaccctaatttctt 5236574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 634 - 681
Target Start/End: Complemental strand, 5236951 - 5236904
Alignment:
Q  634 tatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  5236951 tatgtgtcaagagagatgacgagtggctagaaaggagggaccaaaacc 5236904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 732 - 782
Target Start/End: Complemental strand, 39929126 - 39929076
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| |||| || | ||||||||||||||||||||||| |||||    
T  39929126 tttgttcattcctctctctctattttttcttcttcatctccaaccccaatt 39929076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 732 - 774
Target Start/End: Original strand, 46253263 - 46253305
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaa 774  Q
    ||||||||||| ||||||| | |||||||||||||||||||||    
T  46253263 tttgttcattcttctccctctattttttcttcttcatctccaa 46253305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 791
Target Start/End: Complemental strand, 4241404 - 4241359
Alignment:
Q  746 tccctttgttttttcttcttcatctccaacctcaatttctttatct 791  Q
    ||||| |||||||||||||| |||||||||| ||||||||| ||||    
T  4241404 tccctctgttttttcttctttatctccaaccccaatttcttcatct 4241359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 555 - 673
Target Start/End: Original strand, 43545458 - 43545576
Alignment:
Q  555 ccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatg 654  Q
    |||||||||||  ||||||||||||| ||||   ||||  ||| |||| ||  ||||||||||||||||||||| |   |||||||||||||||||||||    
T  43545458 ccgttaactcccgttacaaaaacgttgtggtggcagacggagacacatgtggtgaagtgtgagttggcaaaagcttccttatgtgtcaagagagatgatg 43545557  T
Q  655 agcggctagaaaggaggga 673  Q
    || ||||||||||||||||    
T  43545558 agtggctagaaaggaggga 43545576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 608 - 681
Target Start/End: Original strand, 25008251 - 25008324
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  25008251 gaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaacc 25008324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 608 - 681
Target Start/End: Original strand, 28848723 - 28848796
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  28848723 gaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaacc 28848796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 608 - 681
Target Start/End: Complemental strand, 28849868 - 28849795
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  28849868 gaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaacc 28849795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 521 - 681
Target Start/End: Complemental strand, 25009462 - 25009302
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||||| || |||||| ||||  |  || ||||||||||   ||||||||||||| ||||   ||||  ||| ||| |||  |||||||||||||    
T  25009462 ttgtaagttgccaatcgtttgcaattcatccctcccgttaactctcgttacaaaaacgttgtggtggcagacggagacacacatggtgaagtgtgagttg 25009363  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||| ||  ||||||||| ||||||||||||  ||||||||||||||||||| ||||    
T  25009362 gcaaaagcttgcttatgtgtcaggagagatgatgaatggctagaaaggagggaccaaaacc 25009302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 608 - 681
Target Start/End: Complemental strand, 43546620 - 43546547
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||||||||||||||||||  ||  ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  43546620 gaagtgtgagttggcaaaagtttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaacc 43546547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 807
Target Start/End: Complemental strand, 28849721 - 28849668
Alignment:
Q  754 ttttttcttcttcatctccaacctcaatttctttatctccaaccccaattaaaa 807  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||    
T  28849721 ttttttcttcttcatctccaaccccaatttcttcatctccaatcccagttaaaa 28849668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 732 - 782
Target Start/End: Original strand, 28848841 - 28848891
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||| |||||    
T  28848841 tttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 28848891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 732 - 782
Target Start/End: Original strand, 25008370 - 25008420
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  25008370 tttgttcattcctctccctctattttttcttcttcatcttcaaccccaatt 25008420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 732 - 782
Target Start/End: Complemental strand, 43546502 - 43546452
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| |||| || | ||||||||||||||||||||||| |||||    
T  43546502 tttgttcattcctctctctctattttttcttcttcatctccaaccccaatt 43546452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 776
Target Start/End: Complemental strand, 25009248 - 25009207
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacc 776  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  25009248 gttcattcctctccctctattttttcttcttcatctccaacc 25009207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 776
Target Start/End: Original strand, 43545638 - 43545679
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacc 776  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  43545638 gttcattcctctccctctattttttcttcttcatctccaacc 43545679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 608 - 681
Target Start/End: Original strand, 8391560 - 8391633
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  8391560 gaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaacc 8391633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 608 - 681
Target Start/End: Complemental strand, 45982699 - 45982626
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  45982699 gaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaatgagggaccaaaacc 45982626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 735 - 807
Target Start/End: Complemental strand, 8392571 - 8392499
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacctcaatttctttatctccaaccccaattaaaa 807  Q
    |||||||| ||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  8392571 gttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctccaaccccagttaaaa 8392499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 521 - 681
Target Start/End: Complemental strand, 8392780 - 8392620
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||||| || |||||| ||||  |  || |||||||||||  ||||||||||||| ||||   ||||  ||| |||  ||  || ||||||||||    
T  8392780 ttgtaagttgccaatcgtttgcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtggtgaggtgtgagttg 8392681  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||| ||  ||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  8392680 gcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaaagagggaccaaaacc 8392620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 521 - 672
Target Start/End: Original strand, 45981489 - 45981640
Alignment:
Q  521 ttgtaagttgctaaccgtttgtaattagtatcttccgttaactccaattacaaaaacgttatggtcatagacatagaaacatatgaggaagtgtgagttg 620  Q
    ||||||||| ||| ||||||| |||| ||  || |||||||||||  ||||||||||||| ||||   ||||  ||| |||   |  |||||||||||||    
T  45981489 ttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggttgcagacggagacacacgcggcgaagtgtgagttg 45981588  T
Q  621 gcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggaggg 672  Q
    |||||||| ||  ||||||||||||||||||||||| || ||||||||||||    
T  45981589 gcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggaggg 45981640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 732 - 782
Target Start/End: Original strand, 8391678 - 8391728
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||| |||||    
T  8391678 tttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 8391728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 732 - 782
Target Start/End: Original strand, 45981694 - 45981744
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||| |||||    
T  45981694 tttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 45981744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 634 - 676
Target Start/End: Complemental strand, 46725154 - 46725112
Alignment:
Q  634 tatgtgtcaagagagatgatgagcggctagaaaggagggacca 676  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||    
T  46725154 tatgtatcaagagagatgatgagtggctagaaaggggggacca 46725112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 791
Target Start/End: Original strand, 33551913 - 33551950
Alignment:
Q  754 ttttttcttcttcatctccaacctcaatttctttatct 791  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  33551913 ttttttcttcttcatctccaaccccaatttcttcatct 33551950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 608 - 681
Target Start/End: Original strand, 193760 - 193833
Alignment:
Q  608 gaagtgtgagttggcaaaagcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    ||||||||||||||||||||| ||  ||||||||||||| ||||||||| || |||||||||||||||| ||||    
T  193760 gaagtgtgagttggcaaaagcttgcttatgtgtcaagagcgatgatgagtggttagaaaggagggaccaaaacc 193833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 732 - 782
Target Start/End: Original strand, 193878 - 193928
Alignment:
Q  732 tttgttcattcatctccctttgttttttcttcttcatctccaacctcaatt 782  Q
    ||||||||||| ||||||| | || |||||||||||||||||||| |||||    
T  193878 tttgttcattcctctccctatattatttcttcttcatctccaaccccaatt 193928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 608 - 681
Target Start/End: Complemental strand, 8170 - 8096
Alignment:
Q  608 gaagtgtgagttggcaaaa-gcatgtctatgtgtcaagagagatgatgagcggctagaaaggagggaccagaacc 681  Q
    |||||||||||||| |||| || ||  ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  8170 gaagtgtgagttggaaaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaaggagggaccaaaacc 8096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 776
Target Start/End: Complemental strand, 8048 - 8007
Alignment:
Q  735 gttcattcatctccctttgttttttcttcttcatctccaacc 776  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  8048 gttcattcctctccctctattttttcttcttcatctccaacc 8007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 733 - 786
Target Start/End: Original strand, 9410202 - 9410255
Alignment:
Q  733 ttgttcattcatctccctttgttttttcttcttcatctccaacctcaatttctt 786  Q
    |||||||| | ||||||| | ||||||||||||||||||||| | |||||||||    
T  9410202 ttgttcatccctctccctctattttttcttcttcatctccaatcccaatttctt 9410255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University