View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6074_high_24 (Length: 299)

Name: NF6074_high_24
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6074_high_24
NF6074_high_24
[»] chr4 (12 HSPs)
chr4 (18-291)||(54849623-54849897)
chr4 (187-275)||(21391053-21391141)
chr4 (76-179)||(54857852-54857953)
chr4 (187-289)||(6112635-6112737)
chr4 (186-275)||(51038767-51038856)
chr4 (187-289)||(3672279-3672381)
chr4 (187-289)||(28093180-28093282)
chr4 (187-273)||(46192364-46192450)
chr4 (187-273)||(49243820-49243906)
chr4 (187-273)||(45829357-45829443)
chr4 (187-273)||(7217770-7217856)
chr4 (187-273)||(44275711-44275797)
[»] chr3 (21 HSPs)
chr3 (187-289)||(22894685-22894787)
chr3 (187-289)||(51339867-51339967)
chr3 (187-289)||(34749982-34750084)
chr3 (187-289)||(36749411-36749513)
chr3 (187-275)||(21559566-21559654)
chr3 (187-275)||(29460665-29460753)
chr3 (187-275)||(29471517-29471605)
chr3 (187-275)||(38231298-38231386)
chr3 (187-289)||(43999994-44000096)
chr3 (187-270)||(30735598-30735681)
chr3 (187-289)||(36370422-36370524)
chr3 (239-289)||(48200742-48200792)
chr3 (189-277)||(29820395-29820483)
chr3 (187-289)||(46112028-46112130)
chr3 (234-286)||(50966182-50966234)
chr3 (234-286)||(51069317-51069369)
chr3 (211-291)||(53638164-53638244)
chr3 (190-265)||(20856259-20856334)
chr3 (188-275)||(39072371-39072458)
chr3 (188-275)||(39467199-39467286)
chr3 (188-272)||(5417684-5417768)
[»] scaffold0062 (1 HSPs)
scaffold0062 (187-289)||(6723-6825)
[»] chr8 (12 HSPs)
chr8 (186-284)||(31536-31634)
chr8 (187-275)||(30432344-30432432)
chr8 (187-275)||(10203669-10203757)
chr8 (187-275)||(36189221-36189309)
chr8 (202-281)||(42668873-42668952)
chr8 (187-289)||(42162603-42162705)
chr8 (187-273)||(12665349-12665435)
chr8 (187-289)||(31318810-31318912)
chr8 (187-289)||(44081785-44081887)
chr8 (186-277)||(3690698-3690789)
chr8 (188-275)||(33726017-33726104)
chr8 (233-291)||(38845105-38845162)
[»] chr7 (19 HSPs)
chr7 (187-289)||(7699967-7700069)
chr7 (187-289)||(7700165-7700267)
chr7 (187-289)||(7700363-7700465)
chr7 (187-289)||(7700561-7700663)
chr7 (187-291)||(21807404-21807508)
chr7 (187-275)||(36346662-36346750)
chr7 (187-289)||(26972287-26972389)
chr7 (187-275)||(34828071-34828158)
chr7 (186-278)||(38321013-38321105)
chr7 (188-275)||(5811261-5811348)
chr7 (188-275)||(23980137-23980224)
chr7 (188-275)||(31148296-31148383)
chr7 (187-270)||(42221066-42221149)
chr7 (187-289)||(28307579-28307681)
chr7 (187-289)||(45782744-45782846)
chr7 (188-275)||(13108154-13108241)
chr7 (187-289)||(30887705-30887807)
chr7 (187-289)||(34108431-34108533)
chr7 (188-272)||(15020288-15020370)
[»] chr5 (11 HSPs)
chr5 (187-289)||(39370932-39371034)
chr5 (187-275)||(33404534-33404622)
chr5 (187-275)||(40888040-40888128)
chr5 (188-275)||(13347134-13347221)
chr5 (188-289)||(2237282-2237383)
chr5 (193-289)||(14831555-14831651)
chr5 (187-289)||(9408123-9408225)
chr5 (187-275)||(17225324-17225410)
chr5 (187-275)||(1815714-1815802)
chr5 (187-275)||(19124570-19124656)
chr5 (187-272)||(27553474-27553559)
[»] chr6 (4 HSPs)
chr6 (187-275)||(3987003-3987091)
chr6 (188-275)||(14022940-14023027)
chr6 (187-273)||(3118147-3118233)
chr6 (187-275)||(15345757-15345843)
[»] chr2 (8 HSPs)
chr2 (187-275)||(33732574-33732662)
chr2 (187-273)||(36315566-36315652)
chr2 (187-273)||(44958118-44958204)
chr2 (187-273)||(16089827-16089913)
chr2 (187-275)||(3830995-3831081)
chr2 (188-273)||(37914336-37914421)
chr2 (211-275)||(37498963-37499027)
chr2 (187-274)||(14573000-14573087)
[»] chr1 (4 HSPs)
chr1 (187-275)||(2509029-2509117)
chr1 (187-289)||(39249947-39250049)
chr1 (187-289)||(34307222-34307324)
chr1 (186-257)||(10146970-10147041)
[»] scaffold0043 (1 HSPs)
scaffold0043 (187-275)||(87262-87349)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 54849623 - 54849897
Alignment:
Q  18 ctatgctggttaattttgtgtttttatatgttgtcgtgagtacaagagtttatataccggttttgaatcttaattcattattaggataataatatccgga 117  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54849623 ctatgctggttaattttgtgtttttatatatggtcgtgagtacaagagtttatataccggttttgaatcttaattcattattaggataataatatcagga 54849722  T
Q  118 tatgtattcttgtcaatataatt-cattgtgaatataagtttcctttctaattaattgtgatttgtgaaccttatacatgaaccaccttagatagcatac 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  54849723 tatgtattcttgtcaatataatttcattgtgaatataagtttcctttctaattgattgtgatttgtgaaccttatacatgaaccaccttagatagcgtac 54849822  T
Q  217 atactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgatgatgt 291  Q
    | ||||||| ||||  || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54849823 acactttgatacccacacgcagttgtgacaagtgacaaaaatattgaaagaagagatgagagaggatgatgatgt 54849897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 21391141 - 21391053
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||||| |||||||  |||| ||||||  ||||| |||||||| ||||||||||||||||||||||||||||    
T  21391141 cttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatga 21391053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 54857852 - 54857953
Alignment:
Q  76 ggttttgaatcttaattcattattaggataataatatccggatatgtattcttgtcaatataattcattgtgaatataagtttcctttctaattaattgt 175  Q
    ||||||||||| ||||||||| |||| ||||||||||| | ||||| |||  ||||||||||||| ||||||||||||||||||||||||||||  ||||    
T  54857852 ggttttgaatcataattcattgttagcataataatatcagaatatgcatt--tgtcaatataattgattgtgaatataagtttcctttctaattgtttgt 54857949  T
Q  176 gatt 179  Q
    ||||    
T  54857950 gatt 54857953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 6112635 - 6112737
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||||| |||||||   ||| ||||||  ||| | |||||||| |||||||||| ||||||||||||||||| | ||||||||    
T  6112635 cttatacatgaaccaccttagatggcatacaccattttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgat 6112734  T
Q  287 gat 289  Q
    |||    
T  6112735 gat 6112737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 51038767 - 51038856
Alignment:
Q  186 ccttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||| ||| |||||||||| | ||||||| ||||||||||||  |||||||||||||| ||| |||||| |||||||||||||||||    
T  51038767 ccttatatatggaccaccttaggtggcatacaaactttgacacccacacacaattgtgacatgtgacaaaaacattgaaagaagagatga 51038856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 3672279 - 3672381
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| | |||||||  |||| ||| ||  ||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  3672279 cttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgat 3672378  T
Q  287 gat 289  Q
    |||    
T  3672379 gat 3672381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 28093282 - 28093180
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||| |||||||| | ||| ||||    
T  28093282 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaaggagagatgaaaaagggtgat 28093183  T
Q  287 gat 289  Q
    |||    
T  28093182 gat 28093180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 46192364 - 46192450
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    |||||||||||| |||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||    
T  46192364 cttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagat 46192450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 49243820 - 49243906
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    ||||||||||||||||||||| | |||||||  |||| ||| ||  ||||| |||||||| |||||||||| |||||||||||||||    
T  49243820 cttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagat 49243906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 45829443 - 45829357
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    |||||||||||||||| |||| |  ||||||   ||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||    
T  45829443 cttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagat 45829357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 7217770 - 7217856
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    ||||||||| ||||||||||| | |||||||  |||| |||||   ||||| |||||||| |||||||||| ||| ||| |||||||    
T  7217770 cttatacataaaccaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggcaaaaacattaaaataagagat 7217856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 44275711 - 44275797
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    ||||||||| ||||||||||| | ||||| |   ||| |||| |  ||||| |||||||| ||| ||||||||||||||||||||||    
T  44275711 cttatacataaaccaccttaggtggcatataccattttacactcacacacatttgtgacacgtgccaaaaatattgaaagaagagat 44275797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 22894685 - 22894787
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||||| | ||||||||    
T  22894685 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgat 22894784  T
Q  287 gat 289  Q
    |||    
T  22894785 gat 22894787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 51339967 - 51339867
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||| ||||||||||| | |||||||| |||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  51339967 cttatacataaaccaccttaggtggcatacatccttttacaccc--acacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgat 51339870  T
Q  287 gat 289  Q
    |||    
T  51339869 gat 51339867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 34750084 - 34749982
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||| | |||||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  34750084 cttatacatgaaccaccttaggtggcatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgat 34749985  T
Q  287 gat 289  Q
    |||    
T  34749984 gat 34749982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 36749411 - 36749513
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    |||||||||||||||||||||||  ||||||   ||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  36749411 cttatacatgaaccaccttagatgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgat 36749510  T
Q  287 gat 289  Q
    |||    
T  36749511 gat 36749513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 21559566 - 21559654
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||| ||||| ||||| | |||||||  |||| ||||||  ||||| |||||||| ||||||||||||||||||||||||||||    
T  21559566 cttatacataaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatga 21559654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 29460665 - 29460753
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||  |||||||| |||||||||| |||||||||||||||||    
T  29460665 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatga 29460753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 29471517 - 29471605
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||  |||||||| |||||||||| |||||||||||||||||    
T  29471517 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatga 29471605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 38231298 - 38231386
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||| ||||    
T  38231298 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagatatga 38231386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 43999994 - 44000096
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| |  ||||||   ||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  43999994 cttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgat 44000093  T
Q  287 gat 289  Q
    |||    
T  44000094 gat 44000096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 30735681 - 30735598
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaaga 270  Q
    |||||| |||||||||||||||| |||||||  |||| ||||||  |||||  ||||||| |||||||||| ||||||||||||    
T  30735681 cttatatatgaaccaccttagatggcatacacccttttacacccacacacatctgtgacacgtggcaaaaacattgaaagaaga 30735598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 36370524 - 36370422
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| |  ||||||   ||| ||||||  ||||| |||||||| ||| |||||| ||||||||||||||||| | ||| ||||    
T  36370524 cttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaaagggtgat 36370425  T
Q  287 gat 289  Q
    |||    
T  36370424 gat 36370422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 48200742 - 48200792
Alignment:
Q  239 ttgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgatgat 289  Q
    |||||||| |||||||||||||||||||||||||||| | |||||||||||    
T  48200742 ttgtgacacgtggcaaaaatattgaaagaagagatgaaaaaggatgatgat 48200792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 29820483 - 29820395
Alignment:
Q  189 tatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgaga 277  Q
    |||||||  |||||||||| | ||||||| ||||||||||||  | |||||||||| | || ||||||| ||| |||||||||||||||    
T  29820483 tatacatagaccaccttaggtggcatacacactttgacacccacatacaattgtgagatgtagcaaaaacattaaaagaagagatgaga 29820395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 46112130 - 46112028
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||| ||||| |  ||||||   ||| ||| ||  ||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  46112130 cttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtgat 46112031  T
Q  287 gat 289  Q
    |||    
T  46112030 gat 46112028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 50966182 - 50966234
Alignment:
Q  234 cacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    |||| |||||||| ||| |||||||||||||||||||||||| | ||||||||    
T  50966182 cacatttgtgacacgtgacaaaaatattgaaagaagagatgaaaaaggatgat 50966234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 51069317 - 51069369
Alignment:
Q  234 cacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    |||| |||||||| ||| |||||||||||||||||||||||| | ||||||||    
T  51069317 cacatttgtgacacgtgacaaaaatattgaaagaagagatgaaaaaggatgat 51069369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 53638164 - 53638244
Alignment:
Q  211 gcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgatgatgt 291  Q
    |||||||  |||| ||||||  ||||||| |||||| |||| ||||| || ||||||||||||||||| || |||||||||    
T  53638164 gcatacaccctttaacacccacacacaatcgtgacatgtggtaaaaacatggaaagaagagatgagagggggtgatgatgt 53638244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 20856334 - 20856259
Alignment:
Q  190 atacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaa 265  Q
    ||||||||||||| |||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggcaaaaacattgaaa 20856259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 39072458 - 39072371
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||| ||||||||||  ||||||  |||| ||||||  | ||| |||||||| |||||| ||| ||| |||||||||||||    
T  39072458 ttatacatgaatcaccttagatgacatacacccttttacacccacatacatttgtgacatgtggcataaacattaaaagaagagatga 39072371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 39467286 - 39467199
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||| ||| ||||||| |||||  ||||||  |||| ||||||  ||| | |||||||| ||| ||||||||||||||||||||||||    
T  39467286 ttatccataaaccaccatagatgacatacacccttttacacccacacatatttgtgacatgtgccaaaaatattgaaagaagagatga 39467199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 5417768 - 5417684
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagaga 272  Q
    ||||| ||| ||||| |||| | ||||||| |||||||||| |  | |||||| | ||| |||||||||||||| ||||||||||    
T  5417768 ttatatatggaccactttaggtggcatacacactttgacactcacatacaattataacatgtggcaaaaatattaaaagaagaga 5417684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 6723 - 6825
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  6723 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgat 6822  T
Q  287 gat 289  Q
    |||    
T  6823 gat 6825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 31634 - 31536
Alignment:
Q  186 ccttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatg 284  Q
    ||||||| ||| |||| ||||| ||||||||| ||||||||||||  | |||||||||||| |||||||||| ||||||||||||||| | ||||||||    
T  31634 ccttatatatgtaccatcttaggtagcatacacactttgacacccacatacaattgtgacatgtggcaaaaacattgaaagaagagataatagaggatg 31536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 30432344 - 30432432
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||||| |||||||  |||| | ||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  30432344 cttatacatgaaccaccttagatggcatacacccttttatacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatga 30432432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 10203669 - 10203757
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| |  ||||||| |||| ||| ||  ||||| |||||||| ||| ||||||||||||||||||||||||    
T  10203669 cttatacatgaaccaccttaggtgacatacatccttttacatccacacacatttgtgacacgtgacaaaaatattgaaagaagagatga 10203757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 36189221 - 36189309
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||| ||||| | |||||||  |||| ||||||  | ||| |||||||| ||||||||||||||||||||||||||||    
T  36189221 cttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggcaaaaatattgaaagaagagatga 36189309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 42668952 - 42668873
Alignment:
Q  202 ccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagagg 281  Q
    |||||| | ||||||| ||||||||||||  |||||||||||||| |||||||||| ||| |||||||| ||||||||||    
T  42668952 ccttaggtggcatacacactttgacacccacacacaattgtgacacgtggcaaaaacattaaaagaagatatgagagagg 42668873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 42162603 - 42162705
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| |  ||||||  |||| ||||||  ||||| |||||||| ||| |||||| ||||||||||||||||| | ||| ||||    
T  42162603 cttatacatgaaccaccttaggtgtcatacacccttttacacccaaacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtgat 42162702  T
Q  287 gat 289  Q
    |||    
T  42162703 gat 42162705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 12665349 - 12665435
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    ||||||||||||||||||||| | |||||||  |||| |||| |  ||||| |||| ||| |||||||||| |||||||||||||||    
T  12665349 cttatacatgaaccaccttaggtggcatacacccttttacactcacacacatttgtaacatgtggcaaaaacattgaaagaagagat 12665435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 31318810 - 31318912
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| | ||||| |   ||| ||| ||  ||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  31318810 cttatacatgaaccaccttaggtggcatataactttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgat 31318909  T
Q  287 gat 289  Q
    |||    
T  31318910 gat 31318912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 44081785 - 44081887
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||| ||||| | |||||||  |||| ||||||  ||||| |||| ||| |||| ||||| ||||||||||||||||| | ||| ||||    
T  44081785 cttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtaacacgtggaaaaaacattgaaagaagagatgaaaaagggtgat 44081884  T
Q  287 gat 289  Q
    |||    
T  44081885 gat 44081887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 3690789 - 3690698
Alignment:
Q  186 ccttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgaga 277  Q
    ||||||||||||| || ||||| |  ||||||| |||||| | ||  ||||| |||||||| || || |||||||| |||||||||||||||    
T  3690789 ccttatacatgaatcatcttaggtgacatacatcctttgatatccacacacacttgtgacatgtagcgaaaatattaaaagaagagatgaga 3690698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 33726017 - 33726104
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||| |||||| |||| | |||||||   ||| ||||||  | ||| |||||||| |||||||||| |||||||||||||||||    
T  33726017 ttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggcaaaaacattgaaagaagagatga 33726104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 38845162 - 38845105
Alignment:
Q  233 acacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgatgatgt 291  Q
    |||||||||||||| |||| |||||||||||||||| |||| |||| || |||||||||    
T  38845162 acacaattgtgacatgtggaaaaaatattgaaagaaaagataagag-gggtgatgatgt 38845105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 7700069 - 7699967
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||| ||||||||||||| |||||||  |||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||| | | ||||||||    
T  7700069 cttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgat 7699970  T
Q  287 gat 289  Q
    |||    
T  7699969 gat 7699967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 7700267 - 7700165
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||| ||||||||||||| |||||||  |||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||| | | ||||||||    
T  7700267 cttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgat 7700168  T
Q  287 gat 289  Q
    |||    
T  7700167 gat 7700165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 7700465 - 7700363
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||| ||||||||||||| |||||||  |||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||| | | ||||||||    
T  7700465 cttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgat 7700366  T
Q  287 gat 289  Q
    |||    
T  7700365 gat 7700363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 7700663 - 7700561
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||| ||||||||||||| |||||||  |||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||| | | ||||||||    
T  7700663 cttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgat 7700564  T
Q  287 gat 289  Q
    |||    
T  7700563 gat 7700561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 21807508 - 21807404
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||||| |||||||   ||| ||||||  ||| | |||||| | |||||||||||||||||||||||||||| |  |||||||    
T  21807508 cttatacatgaaccaccttagatggcatacaccattttacacccacacaaatttgtgatatgtggcaaaaatattgaaagaagagatgaaaatggatgat 21807409  T
Q  287 gatgt 291  Q
    |||||    
T  21807408 gatgt 21807404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 36346750 - 36346662
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||| ||||| ||||| | |||||||  |||| |||||| |||||| |||||||| |||||||||| |||||||||||||||||    
T  36346750 cttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggcaaaaacattgaaagaagagatga 36346662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 26972389 - 26972287
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||| || ||||| |||||||||| |||||||| |||||||| | ||| ||||    
T  26972389 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttatgacacgtggcaaaaacattgaaaggagagatgaaaaagggtgat 26972290  T
Q  287 gat 289  Q
    |||    
T  26972289 gat 26972287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 34828071 - 34828158
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||| | | |||||||| |||| ||| ||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  34828071 cttatacatgaaccaccttgggt-gcatacatccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatga 34828158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 38321013 - 38321105
Alignment:
Q  186 ccttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagag 278  Q
    |||||||||| ||||| ||||| | ||||||| | ||| ||||||  | |||||||||||| |||||||||| |||||||||||| |||||||    
T  38321013 ccttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggcaaaaacattgaaagaagatatgagag 38321105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 5811348 - 5811261
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||| ||||||| ||| | |||||||| ||||  |||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  5811348 ttatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatga 5811261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 23980137 - 23980224
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||| ||||||| ||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  23980137 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatga 23980224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 31148296 - 31148383
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||||||||| ||||| | |||||||  |||| ||||||  ||||| ||||||||  ||||||||| |||||||||||||||||    
T  31148296 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacatggcaaaaacattgaaagaagagatga 31148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 42221149 - 42221066
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaaga 270  Q
    ||||||||||||||||||||| | |||||||   ||| ||||||  ||||| |||||||| |||||||||| ||||||||||||    
T  42221149 cttatacatgaaccaccttaggtggcatacacttttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaaga 42221066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 28307681 - 28307579
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||| ||| ||||||| | |||||||  |||| ||||||  ||||| ||| |||| |||||||||| ||||||||||||||||| | ||| ||||    
T  28307681 cttatacataaactaccttaggtggcatacacccttttacacccacacacatttgcgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgat 28307582  T
Q  287 gat 289  Q
    |||    
T  28307581 gat 28307579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 45782846 - 45782744
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||| |||||| |||| | ||||||||  ||| ||||||  ||||| |||||||| ||| |||||| ||||||||||||||||| | ||| ||||    
T  45782846 cttatacatcaaccactttaggtggcatacatcattttacacccacacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtgat 45782747  T
Q  287 gat 289  Q
    |||    
T  45782746 gat 45782744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 13108154 - 13108241
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||| |||||||||||   |||||||  |||| ||||||  ||||| |||||||| ||||||||||  ||||||||||||||||    
T  13108154 ttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacgttgaaagaagagatga 13108241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 30887705 - 30887807
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||| | ||||| | ||||||| ||||| ||||||  | ||| |||||||| || ||||||| |||||| |||||||||| | ||| ||||    
T  30887705 cttatacatgaacaatcttaggtggcatacacacttttacacccacatacatttgtgacacgtagcaaaaacattgaatgaagagatgaaaaagggtgat 30887804  T
Q  287 gat 289  Q
    |||    
T  30887805 gat 30887807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 34108431 - 34108533
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||| |  ||||||  |||| ||||||  ||| | ||||||||  || |||||| |||||| |||||||||| | ||| ||||    
T  34108431 cttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacatatgacaaaaacattgaatgaagagatgaaaaagggtgat 34108530  T
Q  287 gat 289  Q
    |||    
T  34108531 gat 34108533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 15020288 - 15020370
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagaga 272  Q
    |||||||| ||||||| ||| | |||||||  |||| ||||||  ||||| ||||||||  ||||||||| ||||||||||||||    
T  15020288 ttatacataaaccaccataggtggcatacaaccttttacaccc--acacatttgtgacatatggcaaaaacattgaaagaagaga 15020370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 39370932 - 39371034
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||||||||||| |||||||  |||| ||||||  ||||| |||||||| ||| |||||| ||||||||||||||||| | ||| ||||    
T  39370932 cttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtgccaaaaacattgaaagaagagatgaaaaagggtgat 39371031  T
Q  287 gat 289  Q
    |||    
T  39371032 gat 39371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 33404622 - 33404534
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| |  |||||| ||||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  33404622 cttatacatgaaccaccttaggtgccatacacacttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatga 33404534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 40888128 - 40888040
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||| ||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  40888128 cttatacataaaccaccttaggtggcatacactcttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatga 40888040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 13347134 - 13347221
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||||||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||| ||||||    
T  13347134 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaatagatga 13347221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 2237282 - 2237383
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgatg 287  Q
    |||||||||||||||||||| |  ||||||  |||| ||||||  ||| | |||||||| |||||||||| ||||||||||||||||| | ||| |||||    
T  2237282 ttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 2237381  T
Q  288 at 289  Q
    ||    
T  2237382 at 2237383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 289
Target Start/End: Original strand, 14831555 - 14831651
Alignment:
Q  193 catgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgatgat 289  Q
    ||||||||||||||| | |||||||  |||| ||||||  ||||| |||||| | |||||||||| ||||||||||||||||| | ||| |||||||    
T  14831555 catgaaccaccttaggtggcatacacccttttacacccacacacatttgtgatacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgat 14831651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 9408225 - 9408123
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    |||||||||||||||||| || |  |||||   |||| |||| |  ||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  9408225 cttatacatgaaccacctcaggtgacatacgcccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgat 9408126  T
Q  287 gat 289  Q
    |||    
T  9408125 gat 9408123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 17225324 - 17225410
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||||||||||| |||| | ||||||   |||| ||||||  ||||| |||||||| ||| |||||| |||||||||||||||||    
T  17225324 cttatacatgaaccactttaggtggcatact--cttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatga 17225410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 1815802 - 1815714
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||| ||||| |  ||||||  |||| ||| ||  ||| | |||||||| |||||||||| |||||||||||||||||    
T  1815802 cttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggcaaaaacattgaaagaagagatga 1815714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 19124656 - 19124570
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||||| || | ||||||| ||||||| | ||||||||||  |||||||||||||  |||||||||| ||| |||||||||||||    
T  19124656 cttatacatggactatcttagatggcatacaca-tttgacacccacacacaattgtgacgtgtggcaaaaacatt-aaagaagagatga 19124570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 27553559 - 27553474
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagaga 272  Q
    |||||||||||||||  |||| | ||||| |   ||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||    
T  27553559 cttatacatgaaccattttaggtggcatataccattttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagaga 27553474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 3987091 - 3987003
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  3987091 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatga 3987003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 14022940 - 14023027
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||| ||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  14022940 ttatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatga 14023027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 3118233 - 3118147
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    |||||| |||||||||||||| | |||||||  |||| |||| |  ||||| |||||||| |||||||||| |||||||||| ||||    
T  3118233 cttatatatgaaccaccttaggtggcatacacccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaatagat 3118147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 15345843 - 15345757
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||| ||||||||||| | ||||| |  |||| ||||||  | ||| |||||||| |||||||||| |||||||||| ||||||    
T  15345843 cttatacatcaaccaccttaggtggcatatactcttttacaccc--atacatttgtgacacgtggcaaaaacattgaaagaaaagatga 15345757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 33732574 - 33732662
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  33732574 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatga 33732662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 36315566 - 36315652
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||    
T  36315566 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagat 36315652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 44958118 - 44958204
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    ||||||||||||||||||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||    
T  44958118 cttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagat 44958204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 16089827 - 16089913
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    ||||||||||||||||||||  | |||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||    
T  16089827 cttatacatgaaccaccttaagtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagat 16089913  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 3831081 - 3830995
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| |  ||||||  |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  3831081 cttatacatgaaccaccttaggtgacatacacccttttacaccc--acacatttgtgacacgtggcaaaaacattgaaagaagagatga 3830995  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 37914421 - 37914336
Alignment:
Q  188 ttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagat 273  Q
    |||||||| ||||||||||| | |||||||  |||| ||| ||  ||||| |||||||| |||||||||| |||||||||||||||    
T  37914421 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagat 37914336  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 37499027 - 37498963
Alignment:
Q  211 gcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    |||||||| |||| |||| |  ||||| |||||||| |||||||||| |||||||||||||||||    
T  37499027 gcatacatccttttacactcacacacatttgtgacatgtggcaaaaacattgaaagaagagatga 37498963  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 14573000 - 14573087
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatg 274  Q
    ||||||||| ||||||||||| | |||| ||  |||| ||| ||  ||||| |||||||| || ||||||| ||||||||||||||||    
T  14573000 cttatacataaaccaccttaggtggcatccacccttttacatccacacacatttgtgacacgtagcaaaaacattgaaagaagagatg 14573087  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 2509029 - 2509117
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| |  ||||||| |||| ||||||  ||||| |||||||| |||||||||| |||||||||||||||||    
T  2509029 cttatacatgaaccaccttaggtgacatacatccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatga 2509117  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 39250049 - 39249947
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||||||||| ||||| | |||||||  |||| ||||||  ||||| |||||||| |||||||||| ||||||||||||||||| | |||||| |    
T  39250049 cttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatggt 39249950  T
Q  287 gat 289  Q
    |||    
T  39249949 gat 39249947  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 34307324 - 34307222
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatgagagaggatgat 286  Q
    ||||||||| ||||||||||| | |||||||  |||| ||| ||  ||||| |||||||| |||||||||| |||||||||||| |||| | ||| ||||    
T  34307324 cttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagatatgaaaaagggtgat 34307225  T
Q  287 gat 289  Q
    |||    
T  34307224 gat 34307222  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 10146970 - 10147041
Alignment:
Q  186 ccttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaa 257  Q
    ||||||||||| |||||||||| | |||||||  ||||||| |||  |||||||||||||| ||||||||||    
T  10146970 ccttatacatggaccaccttaggtggcatacaccctttgacccccacacacaattgtgacatgtggcaaaaa 10147041  T

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Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 87349 - 87262
Alignment:
Q  187 cttatacatgaaccaccttagatagcatacatactttgacaccccgacacaattgtgacaagtggcaaaaatattgaaagaagagatga 275  Q
    ||||||||||||||||||||| | |||||||  |||  ||||| | ||||| |||||||| |||||||||| |||||||||||||||||    
T  87349 cttatacatgaaccaccttaggtggcatacacccttgtacaccac-acacatttgtgacacgtggcaaaaacattgaaagaagagatga 87262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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