View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_high_26 (Length: 286)
Name: NF6074_high_26
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 52054420 - 52054170
Alignment:
| Q |
17 |
atgtataaaacaattcaatacaaagtttagagagttgataacatgattaaggatgttccagtgccaactcaaaaattagtctcataatgatttcaaagag |
116 |
Q |
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| T |
52054420 |
atgtataaaacaattcaatacaaagtttggagagttgataacatgattgaggatgttccactaccaactcaaaaattagtctcatagtgatttcaaagag |
52054321 |
T |
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| Q |
117 |
tctatgtcgtgtgaatactttgaggtgactaccgaaggtcaaatactctaattatacgatgaattgtttaacaacaatgactaagtagttaagacatgtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
52054320 |
tctatgtcgtgtgaatactttgaggtgactaccgaaggtcaaatactctaattatacgacgaattgtttaacaacaatgacttagtagttaagacatgtg |
52054221 |
T |
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| Q |
217 |
accaacacgccgcatcaccacccaaaactttaaaacattaatcatatcaat |
267 |
Q |
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| T |
52054220 |
accaacatgccgcatcatcacccaaaactttaaaacattaatcatatcaat |
52054170 |
T |
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