View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_high_41 (Length: 234)
Name: NF6074_high_41
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 36790545 - 36790340
Alignment:
| Q |
15 |
cacagaatggcttaaaa----acatgtataataatacataagacatatgaatttaatcaagaccaaaatcagagagttcctcaatataattgacactcat |
110 |
Q |
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| T |
36790545 |
cacagaatggcttaaaataaaacatgtataataatacataagacatatgaatttaatcaagaccaaaatcagagagttcctcaatataattgacactcat |
36790446 |
T |
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| Q |
111 |
tccttgaataattatgtaccgtatttccttccttacaagttaccaccatatcctcattttatgatttggttgttttagtttgttggtattggagttaggc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36790445 |
tccttgaataattatgtaccgtatttccttccttacaagttaccaccatagcctcattttatgatttggttgttttagtttgttggtattggagttaggc |
36790346 |
T |
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| Q |
211 |
tataat |
216 |
Q |
| |
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|||||| |
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| T |
36790345 |
tataat |
36790340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 27094514 - 27094400
Alignment:
| Q |
93 |
aatataattgacactcattccttgaataattatgtaccgtatttccttccttacaagttaccaccatatcctcattttatgatttggttgttttagtttg |
192 |
Q |
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||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||| ||||||| | |||||| |||||||||| ||| |
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| T |
27094514 |
aatataattgacactcattccttgaatcattgtgtacaatat----ttccttacaagttaccaccatagcctcattatgtgattttgttgttttag-ttg |
27094420 |
T |
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| Q |
193 |
ttggtattggagttaggcta |
212 |
Q |
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|| ||||||||||||||||| |
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| T |
27094419 |
ttagtattggagttaggcta |
27094400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 93 - 216
Target Start/End: Complemental strand, 13805960 - 13805842
Alignment:
| Q |
93 |
aatataattgacactcattccttgaataattatgtaccgtatttccttccttacaagttaccaccatatcctcattttatgatttggttgttttagtttg |
192 |
Q |
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||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||| ||||||| | ||||| |||||||||| ||| |
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| T |
13805960 |
aatataattgacactcattccttgaatcattgtgtacaatat----ttccttacaagttaccaccatagcctcattatgcgattttgttgttttag-ttg |
13805866 |
T |
|
| Q |
193 |
ttggtattggagttaggctataat |
216 |
Q |
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|| ||||| ||||||||||||||| |
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| T |
13805865 |
ttagtatttgagttaggctataat |
13805842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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