View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_high_7 (Length: 447)
Name: NF6074_high_7
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 278 - 447
Target Start/End: Complemental strand, 22214393 - 22214223
Alignment:
| Q |
278 |
tgtgatgtcatttctttgatgcgctatttatacttctaacttgttttatcattcataaatgttgtttctcatctcttggtattttcattatctcttacga |
377 |
Q |
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| T |
22214393 |
tgtgatgtcatttctttgatgcgctatttatacttctaacttgttttatcattcataaatgttgtttctcatctcttggtattttcattatctcttacga |
22214294 |
T |
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| Q |
378 |
aagggtaaatgataaatt-nnnnnnnnnntgaagtataataaaacaataatgtactttgatgaacactaat |
447 |
Q |
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| T |
22214293 |
aagggtaaatgataaattaaaaaaaaaaatgaagtataataaaacaataatgtactttgatgaacactaat |
22214223 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 26167183 - 26167293
Alignment:
| Q |
40 |
ttcttaatagtagcctctttcctcttttgagtttcttcatgagcatcgactaatccttcaagttaaccttgtgtcatcttcaggccatgagtgatcatct |
139 |
Q |
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|||||||||| ||||| ||| |||| | | ||||||||||||||| | ||||||||| |||| ||| ||||||| ||||| | ||||||||||| | |
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| T |
26167183 |
ttcttaatagcggcctcattcatcttcttaatttcttcatgagcattggataatccttcgagtttaccatgtgtcaccttcattctctgagtgatcatat |
26167282 |
T |
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| Q |
140 |
cttctagattt |
150 |
Q |
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| T |
26167283 |
cttctagattt |
26167293 |
T |
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