View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_10 (Length: 421)
Name: NF6074_low_10
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 53681006 - 53680599
Alignment:
| Q |
1 |
tgaaccagtaatcaaacccaagagttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcatctaccatatcttaataaataagtaa |
100 |
Q |
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| T |
53681006 |
tgaaccagtaatcaaacccaagagttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcatttaccatatcttaataaataagtaa |
53680907 |
T |
|
| Q |
101 |
aattaccaaaaacatgtaataaatctgaatgagaaaacatgtaaccatggagtataaggttaaaccaagagtcatccatccaaatgtgatcaacttagtg |
200 |
Q |
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| T |
53680906 |
aattaccaaaaacatgtaagaaatctgaatgagaaaacatgtaaccatggagtataaggttaaaccaagagtcatccatccaaatgtaatcaac-tagtg |
53680808 |
T |
|
| Q |
201 |
gttgcataaaattagtgctatttgagagtctggttcacaaaacaccttttcatttccaactccaagccattttcag-----gccatgaacaatttcaatt |
295 |
Q |
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| T |
53680807 |
ggtgcataaaattagtgctatttgagagtctggttcacaaaacaccttttcatttccaactccaagccattttcaggccatgccatgaacaatttcaatt |
53680708 |
T |
|
| Q |
296 |
gatgatttggttttacgttaatgtttgtactttgtattgattctagagaacctagaaaagcttccaagggactcctccacatctctcttttatcaaactt |
395 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53680707 |
gatgatctggttttacgttaatgtttgtactttgtattgattctagagaacctagaaaagcttccaagggactcctccacatctctcttttatcaaactt |
53680608 |
T |
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| Q |
396 |
gccaggatt |
404 |
Q |
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||||||||| |
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| T |
53680607 |
gccaggatt |
53680599 |
T |
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