View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_11 (Length: 415)
Name: NF6074_low_11
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 77 - 386
Target Start/End: Complemental strand, 7652894 - 7652585
Alignment:
| Q |
77 |
tccttcatctcgtttcgtaagaaggggcttgtgcttcatctcagtcgttttcccttcatcttgtttgttgttcaattgttcctctctcgtttgttcaatc |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7652894 |
tccttcatctcgtttcgtaagaaggggcttgtgcttcatctcagttgttttcccttcatcttgtttgttgttcaattgttcctctctcgtttgttcaatc |
7652795 |
T |
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| Q |
177 |
gttctcgttttcccttcatcttggtttggccatatgttcatctcattaataagcagctacctattacccaatgaataagataaaggccttgtgttggaga |
276 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
7652794 |
gttctcgttttcccttcatcttggtttgcccatatgttcatctcattaataagcagctacctattacccgatgaagaagataaaggccttgtgttggaga |
7652695 |
T |
|
| Q |
277 |
aggagtaaagggaagaagaatgaaggtttggagcttggtgaacccacataccttatcaaaatacctagggatttctactaattgaggtcagttttcaaat |
376 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7652694 |
aggagtaaagggaagaagaatgaaggttcagagcttggtgaacccacatactttatcaaaatacctagggatttctactaattgaggtcagtttttaaat |
7652595 |
T |
|
| Q |
377 |
taggtgatga |
386 |
Q |
| |
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|||||||||| |
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| T |
7652594 |
taggtgatga |
7652585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 7652964 - 7652919
Alignment:
| Q |
6 |
agcagcacagatagaacactcataaaacacacaaatttggctttct |
51 |
Q |
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| T |
7652964 |
agcaccactgatagaacactcataaaacacacaaatttggctttct |
7652919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 31978974 - 31979095
Alignment:
| Q |
80 |
ttcatctcgtttcgtaagaaggggcttgtgcttcatctcagtcgttttcccttcatcttgtttgttgttcaattgttcctctctcgtttgttcaatcgtt |
179 |
Q |
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|||||||| ||||| ||||| ||| || | || ||||||| |||| ||| ||| |||||||||| |||||||| ||||||||||| |||| ||||||||| |
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| T |
31978974 |
ttcatctcatttcggaagaaagggttttt-ctccatctcaatcgtgttcacttgatcttgtttgatgttcaatcgttcctctctcttttgctcaatcgtt |
31979072 |
T |
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| Q |
180 |
ctcgttttcccttcatcttggtt |
202 |
Q |
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||||||||||| |||||| |||| |
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| T |
31979073 |
ctcgttttcccatcatctaggtt |
31979095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 381
Target Start/End: Complemental strand, 35092000 - 35091906
Alignment:
| Q |
288 |
gaagaagaatgaaggtttggagcttggtgaacccacataccttatcaaaatacctagggatttctactaattgaggtcagttt-tcaaattaggt |
381 |
Q |
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| T |
35092000 |
gaagaataatgaaggtttggagcttggtgaacccacacacttcatcaaaatcttgagggatttctactaattgaggtgagtttctcaaattaggt |
35091906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 27409730 - 27409641
Alignment:
| Q |
113 |
catctcagtcgttttcccttcatcttgtttgttgttcaattgttcctctctcgtttgttcaatcgttctcgttttcccttcatcttggtt |
202 |
Q |
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| T |
27409730 |
catctcaatcgtgttcacttgatcttgtttgatgttcaatcgttcctctctcttttgctcaaccgttctcgttttcccatcatctaggtt |
27409641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 40927767 - 40927818
Alignment:
| Q |
267 |
gtgttggagaaggagtaaagggaagaagaatgaaggtttggagcttggtgaa |
318 |
Q |
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|||||| |||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
40927767 |
gtgttgaagaaggagtaaatggcagaagaatgaaggtttggagcttggtgaa |
40927818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 32090502 - 32090624
Alignment:
| Q |
211 |
tgttcatctcattaataagcagctacctattacccaatgaataagataaaggccttgtgttggagaaggagtaaagggaagaagaatgaaggtttggagc |
310 |
Q |
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||||||||||||||||| |||||| ||||||| | | ||| ||||| |||| || || ||| |||||||||| || ||||||||||||||| |||| |
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| T |
32090502 |
tgttcatctcattaataggcagctgtctattactcgacgaagaagatgaagggctcgttttg---aaggagtaaaaggt-gaagaatgaaggtttagagc |
32090597 |
T |
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| Q |
311 |
ttggtgaacccacataccttatcaaaa |
337 |
Q |
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|||||||||||||| || | ||||||| |
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| T |
32090598 |
ttggtgaacccacacacttcatcaaaa |
32090624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 48506096 - 48506045
Alignment:
| Q |
267 |
gtgttggagaaggagtaaagggaagaagaatgaaggtttggagcttggtgaa |
318 |
Q |
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|||||| |||||||||||| || | ||||||||||||||||||||||||||| |
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| T |
48506096 |
gtgttgaagaaggagtaaatggcaaaagaatgaaggtttggagcttggtgaa |
48506045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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