View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_12 (Length: 402)
Name: NF6074_low_12
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 2339472 - 2339842
Alignment:
| Q |
19 |
gaatagtgggcacattagctggaggagttgttctggattatatgactaacacattatcaaatgcatttaaggttggtattcaaattaaagatgggttcta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2339472 |
gaatagtgggcacattagctggaggagttgttctggattatatgactaacacattatcaaatgcatttaaggttggtattcaaattaaagacgggttcta |
2339571 |
T |
|
| Q |
119 |
gtattacttttataactttttaggttcatagtatcttatgccataagaatcatgcatccgaagttccacactaaacagctgtggtcttagttatagggtt |
218 |
Q |
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| T |
2339572 |
gtattacttttataactttttagattcatagtatcttatgccataagaatcatgcatccgaagttccacactaaacagctgtggtcttagttatagggtt |
2339671 |
T |
|
| Q |
219 |
gtaatttgtaaacggtcttctgatctggcatacagttgaaaatttaaagatttcttcacttgagcatacttaacactaatcttttgcagcttctctcagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2339672 |
gtaatttgtaaacggtcttctgatctggcatacagttgaaaatttaaagatttcttcacttgagcatacttaacactaatcttttgcagcttctctcagt |
2339771 |
T |
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| Q |
319 |
gacaacatttcttggggcagtattttgttttggtgcctttttatgcagaaatgtgaacggctttcttgttc |
389 |
Q |
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| T |
2339772 |
gacaacatttcttggggcagtatgttgttttggtgcctttttatgcagaaatgtgaacggctttcttgttc |
2339842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 2347103 - 2347362
Alignment:
| Q |
19 |
gaatagtgggcacattagctggaggagttgttctggattatatgactaacacattatcaaatgcatttaaggttggtattcaaattaaagatgggttcta |
118 |
Q |
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| T |
2347103 |
gaatagtgggcacattagctggaggatttgttctggattatatgactaacacattatcaaatgcatttaaggtcggtattcaaattaaagataggttcta |
2347202 |
T |
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| Q |
119 |
gtattacttttataactttttaggttcatagtatcttatgccataagaatcatgcatccgaagttccacactaaacagctgtggtcttagttatagggtt |
218 |
Q |
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||||||||||||| || || || |||||| |||| |||| ||||| |||| |||||||| | ||| |||||||||||||||||| ||||||||||||| |
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| T |
2347203 |
gtattacttttat-accttctatgttcatcgtatattataccatatgaattatgcatcctcggctcctcactaaacagctgtggtcatagttatagggtt |
2347301 |
T |
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| Q |
219 |
gtaatttgtaaacggtcttctgatctggcatacagttgaaaatttaaagatttcttcactt |
279 |
Q |
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|| ||||||| || ||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
2347302 |
ttagtttgtaagtggccttctgatcaggcatacatttgaaaatttaaagatttcttcactt |
2347362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 2347667 - 2347763
Alignment:
| Q |
290 |
aacactaatcttttgcagcttctctcagtgacaacatttcttggggcagtattttgttttggtgcctttttatgcagaaatgtgaacggctttcttg |
386 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||| |
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| T |
2347667 |
aacactattcttttgcagcttctctcagtgacaacatttcttggggcagcattttcttttggagccttcttatgcagaaatgtgaacggctttcttg |
2347763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 2352616 - 2352659
Alignment:
| Q |
300 |
ttttgcagcttctctcagtgacaacatttcttggggcagtattt |
343 |
Q |
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| T |
2352616 |
ttttgcagcttctctcagtgacaacatttcttggtgcaggattt |
2352659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 36795637 - 36795559
Alignment:
| Q |
19 |
gaatagtgggcacattagctggaggagttgttctggattatatgactaacacattatcaaatgcatttaaggttggtat |
97 |
Q |
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||||| ||||||| ||||| ||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
36795637 |
gaatattgggcactttagcaggaggccttgttcttgattacatgactaacaccctatcaaatgcatttaaggttggtat |
36795559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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