View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_13 (Length: 370)
Name: NF6074_low_13
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 41 - 352
Target Start/End: Original strand, 33223562 - 33223874
Alignment:
| Q |
41 |
tcaatttttcaaataatactcggtgtccatgtgtcaatgtcgtatgcggtgtatgtgtgtcaatgtcagtgcttcataggcagctagtagatacaattaa |
140 |
Q |
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| T |
33223562 |
tcaatttttcaaataatactcggtgttcatgtgtcagtgtcgtatgcggtgtatgtgtgtcaatgtcagtgcttcataggcagctagtagatacaatcaa |
33223661 |
T |
|
| Q |
141 |
atgaaataatcatcaacattagacacaaaaatcaactaaataaaataaaagggcacaactaaattcataagcataaagcatttaagcactaaagtttcaa |
240 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223662 |
atgcaataatcatcaacattagacacaaaaatcaagtaaataaaataaaagggcacaactaaattcataagcataaagcatttaagcactaaagtttcaa |
33223761 |
T |
|
| Q |
241 |
tcttatatgaagaataacaaataaaagcatgtggggttcgagtttgcaactaagactgcat-ataaaaataacagttctataagtgaatcaaagaataat |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
33223762 |
tcttatatgaagaataacaaataaaagcatgtggggttcgagtttgcaactaagactgcataataaaaataacagttctataagtgaatcaaagaacaat |
33223861 |
T |
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| Q |
340 |
gaacgaacctaac |
352 |
Q |
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||||||||||||| |
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| T |
33223862 |
gaacgaacctaac |
33223874 |
T |
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