View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6074_low_14 (Length: 363)

Name: NF6074_low_14
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6074_low_14
NF6074_low_14
[»] chr4 (2 HSPs)
chr4 (53-272)||(49159176-49159390)
chr4 (58-113)||(42451963-42452018)
[»] chr5 (1 HSPs)
chr5 (250-359)||(35909274-35909383)
[»] chr2 (2 HSPs)
chr2 (53-113)||(26227813-26227873)
chr2 (53-107)||(41101315-41101370)
[»] chr8 (3 HSPs)
chr8 (58-113)||(33609438-33609493)
chr8 (58-115)||(32158622-32158679)
chr8 (82-115)||(40520067-40520100)
[»] chr7 (1 HSPs)
chr7 (53-115)||(2847264-2847326)
[»] chr1 (1 HSPs)
chr1 (69-113)||(10884523-10884567)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 53 - 272
Target Start/End: Original strand, 49159176 - 49159390
Alignment:
Q  53 ggggaattatagttatttcagttaagaatgagcattttttgttggataaagagcagaattcttgctcaaatcttcatcttatcatccaagcccgtttggc 152  Q
    ||||||||||||| |||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49159176 ggggaattatagtcatttcagttgggaattagcattttttgttggataaagagcagaattcttgctcaaatcttcatcttatcatccaagcccgtttggc 49159275  T
Q  153 ccaaaatcataaataccaaaagtctattattctgtccgttcagacattttctttcaacactcattttattatcggatgaatatgatattcaaataggcat 252  Q
    ||||||||||||||||||||   | ||| ||  ||||     |||| ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||    
T  49159276 ccaaaatcataaataccaaagacccattgtttagtcc-----gacactttcttttaacgctcattttattattggatgaatatgatattcaaataggcat 49159370  T
Q  253 tgccatttaaaaaataatgt 272  Q
    ||||||||||||||||||||    
T  49159371 tgccatttaaaaaataatgt 49159390  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 42451963 - 42452018
Alignment:
Q  58 attatagttatttcagttaagaatgagcattttttgttggataaagagcagaattc 113  Q
    |||||||| ||||||||| ||||||| |||||||  ||||||||||| ||||||||    
T  42451963 attatagtcatttcagttgagaatgaacatttttgattggataaagaacagaattc 42452018  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 35909383 - 35909274
Alignment:
Q  250 cattgccatttaaaaaataatgttttatatagattttataaacactgggcacaagtccatccnnnnnnnttcacacattctagtttgggttaaaccgcca 349  Q
    |||||||||||| | ||| ||| |||||||||  | ||| |||||  ||||||||||||| |       |||||||||||||||||||||  ||||||||    
T  35909383 cattgccatttagataattatgctttatatagcatgtatcaacacatggcacaagtccatgctaaataattcacacattctagtttgggtgtaaccgcca 35909284  T
Q  350 cataattggg 359  Q
    |||| |||||    
T  35909283 catatttggg 35909274  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 26227813 - 26227873
Alignment:
Q  53 ggggaattatagttatttcagttaagaatgagcattttttgttggataaagagcagaattc 113  Q
    |||| ||||||||  ||||||||  |||||||||||||||||||| |||||||||| ||||    
T  26227813 ggggtattatagtattttcagttcggaatgagcattttttgttgggtaaagagcaggattc 26227873  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 41101315 - 41101370
Alignment:
Q  53 ggggaattatagttatttcagttaag-aatgagcattttttgttggataaagagca 107  Q
    |||| |||||||| |||||||||  | |||||||||||||||||||||||||||||    
T  41101315 ggggcattatagtcatttcagttggggaatgagcattttttgttggataaagagca 41101370  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 33609438 - 33609493
Alignment:
Q  58 attatagttatttcagttaagaatgagcattttttgttggataaagagcagaattc 113  Q
    |||||||| ||||||||| ||||||||||||||| ||||| |||||| || |||||    
T  33609438 attatagtcatttcagttgagaatgagcatttttggttgggtaaagaccaaaattc 33609493  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 32158679 - 32158622
Alignment:
Q  58 attatagttatttcagttaagaatgagcattttttgttggataaagagcagaattctt 115  Q
    |||||||| |||| ||||  |||||||||||||| ||||| ||||||||| |||||||    
T  32158679 attatagtcattttagttgggaatgagcatttttggttgggtaaagagcataattctt 32158622  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 40520100 - 40520067
Alignment:
Q  82 gagcattttttgttggataaagagcagaattctt 115  Q
    ||||| ||||||||||||||||||||||||||||    
T  40520100 gagcaatttttgttggataaagagcagaattctt 40520067  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 2847264 - 2847326
Alignment:
Q  53 ggggaattatagttatttcagttaagaatgagcattttttgttggataaagagcagaattctt 115  Q
    |||| |||||||| |||||||||  |||| | |||||||||| || |||||||||||||||||    
T  2847264 ggggcattatagtcatttcagttgggaataaacattttttgtagggtaaagagcagaattctt 2847326  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 10884523 - 10884567
Alignment:
Q  69 ttcagttaagaatgagcattttttgttggataaagagcagaattc 113  Q
    ||||||| |||||||||| ||||| |||| |||||||||||||||    
T  10884523 ttcagttgagaatgagcaattttttttgggtaaagagcagaattc 10884567  T

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