View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6074_low_16 (Length: 349)

Name: NF6074_low_16
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6074_low_16
NF6074_low_16
[»] chr5 (9 HSPs)
chr5 (1-341)||(37129947-37130287)
chr5 (25-341)||(37137127-37137446)
chr5 (1-327)||(37144245-37144556)
chr5 (1-158)||(37162687-37162844)
chr5 (2-163)||(38745713-38745874)
chr5 (165-320)||(38745801-38745956)
chr5 (179-340)||(37162790-37162951)
chr5 (29-159)||(35144295-35144425)
chr5 (181-309)||(35144220-35144348)
[»] chr4 (4 HSPs)
chr4 (2-163)||(3024925-3025086)
chr4 (165-325)||(3024838-3024998)
chr4 (1-200)||(29723536-29723735)
chr4 (179-285)||(29723523-29723632)
[»] chr6 (1 HSPs)
chr6 (175-231)||(18035611-18035667)


Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 37129947 - 37130287
Alignment:
Q  1 ccttgacctccaaagttcatttcgtggcggaagaattccaaatgatcttgcacgtctttcgcacttgcaatatcttgatctttcatggaatggcctcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37129947 ccttgacctccaaagttcatttcgtggcggaagaattccaaatgatcttgcacgtcttttgcacttgcaatatcttgatctttcatggaatggcctcaag 37130046  T
Q  101 ggtacaatccctcatcaatttggaaatctctctcatttgcagcatcttgatcttagttcaaattatggccttgctggaacaatccctcatcaacttggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37130047 ggtacaatccctcatcaatttggaaatctctctcatttgcagcatcttgatcttagttcaaattatggcgttgctggaacaatccctcatcaacttggaa 37130146  T
Q  201 atctctctcatttgcattaccttgatcttagttcaaattttcttgttggaaccattcctcatcaacttggaagcctttcaaatttacaggaacttcatct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37130147 atctctctcatttgcattaccttgatcttagttcaaattttcttgttggaaccattcctcatcaacttggaagcctttcaaatttacaggaacttcatct 37130246  T
Q  301 agaatacaatgaaggactcaaagttcaagaccagaataatc 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37130247 agaatacaatgaaggactcaaagttcaagaccagaataatc 37130287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 341
Target Start/End: Original strand, 37137127 - 37137446
Alignment:
Q  25 tggcggaagaattccaaatgatcttgcacgtctttcgcacttgcaatatcttgatctttcatggaatggcctcaagggtacaatccctcatcaatttgga 124  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| || |||| | |||    
T  37137127 tggcggaagaattccaaatgatcttgctcatctgtcgcacttgcaatatcttgatctttcaaggaatggcctcgagggtacaatccgtcctcaactcgga 37137226  T
Q  125 aatctctctcatttgcagcatcttgatcttagttcaaattatggccttgctggaacaatccctcatcaacttggaaatctctctcatttgcattaccttg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||| ||||||||||| || |||||||| |||||||    
T  37137227 aatctctctcatttgcagcatcttgatcttagttcaaattatggccttgttggaaaaattccttatcagcttggaaatctttcacatttgcagtaccttg 37137326  T
Q  225 atcttagttcaaattttcttgttggaaccattcctcatcaacttggaagcctttcaaatttacaggaacttcatctagaatacaa---tgaaggactcaa 321  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||  | ||| ||||    |||||||||||    
T  37137327 atcttagttcaaatgttcttgttggaacgattcctcatcaacttggaagcctttcagatttacaggagcttcacattgaagacaacatggaaggactcaa 37137426  T
Q  322 agttcaagaccagaataatc 341  Q
    |||||| ||| |||||||||    
T  37137427 agttcatgacgagaataatc 37137446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 37144245 - 37144556
Alignment:
Q  1 ccttgacctccaaagttcatttcgtggcggaagaattccaaatgatcttgcacgtctttcgcacttgcaatatcttgatctttcatggaatggcctcaag 100  Q
    ||||||||||||   |||||||  ||| ||||||||||||||| ||||||| ||||||| ||| || |||||||||||| ||||          ||||||    
T  37144245 ccttgacctccatgcttcatttgatggaggaagaattccaaataatcttgctcgtcttttgcatttacaatatcttgatatttc----------ctcaag 37144334  T
Q  101 ggtacaatccctcatcaatttggaaatctctctcattt-gcagcatcttgatcttagttcaaattatggccttgctggaacaatccctcatcaacttgga 199  Q
     ||||||||||||||||| ||| |||||||| || ||| |||| | |||||||||||||||||  ||   ||||  || |||||||||||||   |||||    
T  37144335 cgtacaatccctcatcaacttgaaaatctctttcgttttgcagtaccttgatcttagttcaaacgat---cttgagggtacaatccctcatc---ttgga 37144428  T
Q  200 aatctctctcatttgcattaccttgatcttagttcaaattttcttgttggaaccattcctcatcaacttggaagcctttcaaatttacaggaacttcatc 299  Q
    ||||||||||||||||| |||||||||||||||   |||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37144429 aatctctctcatttgcaataccttgatcttagtgggaatgatcttgttggaaccattcctcatcaacttggaagcctttcaaatttacaggagcttcatc 37144528  T
Q  300 tagaatacaatgaaggactcaaagttca 327  Q
    | | || |||| ||||||| ||||||||    
T  37144529 ttggatccaatcaaggactgaaagttca 37144556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37162687 - 37162844
Alignment:
Q  1 ccttgacctccaaagttcatttcgtggcggaagaattccaaatgatcttgcacgtctttcgcacttgcaatatcttgatctttcatggaatggcctcaag 100  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  |||| ||||| ||    
T  37162687 ccttgacctccaaagttcattttatggaggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttcacagaatagcctcgag 37162786  T
Q  101 ggtacaatccctcatcaatttggaaatctctctcatttgcagcatcttgatcttagtt 158  Q
    |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  37162787 ggtacaatccctcatcaacttggaaatctgtctcatttgcagcaccttgatcttagtt 37162844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 38745713 - 38745874
Alignment:
Q  2 cttgacctccaaagttcatttcgtggcggaagaattccaaatgatcttgcacgtctttcgcacttgcaatatcttgatctttcatggaatggcctcaagg 101  Q
    |||||||||||| ||||||||  ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||   ||||||||  |||    
T  38745713 cttgacctccaaggttcatttgatgggggaagaattccaaaggatcttgctcgtctttcgcacttgcaatatcttgatctttcagacaatggccttgagg 38745812  T
Q  102 gtacaatccctcatcaatttggaaatctctctcatttgcagcatcttgatcttagttcaaat 163  Q
    |||||||||||||| || ||||||||||||||||||||||| | ||||||||||||||||||    
T  38745813 gtacaatccctcattaacttggaaatctctctcatttgcagtaccttgatcttagttcaaat 38745874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 38745801 - 38745956
Alignment:
Q  165 atggccttgctggaacaatccctcatcaacttggaaatctctctcatttgcattaccttgatcttagttcaaattttcttgttggaaccattcctcatca 264  Q
    |||||||||  || |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||  |||||| |||||| ||| || ||     
T  38745801 atggccttgagggtacaatccctcattaacttggaaatctctctcatttgcagtaccttgatcttagttcaaatgatcttgtgggaaccgttcttcgtcc 38745900  T
Q  265 acttggaagcctttcaaatttacaggaacttcatctagaatacaatgaaggactca 320  Q
    ||||||||| ||||||||||| |||||||||||||| | ||||||| |||||||||    
T  38745901 acttggaagtctttcaaatttgcaggaacttcatcttggatacaatcaaggactca 38745956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 179 - 340
Target Start/End: Original strand, 37162790 - 37162951
Alignment:
Q  179 acaatccctcatcaacttggaaatctctctcatttgcattaccttgatcttagttcaaattttcttgttggaaccattcctcatcaacttggaagccttt 278  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||||||||  |||  ||||||||||||||||||| |||| |||||||||||||    
T  37162790 acaatccctcatcaacttggaaatctgtctcatttgcagcaccttgatcttagttggaataatcttgttggaaccattccttatcagcttggaagccttt 37162889  T
Q  279 caaatttacaggaacttcatctagaatacaatgaaggactcaaagttcaagaccagaataat 340  Q
    | ||||| ||| | |||||||| | | |||||  ||||||||||||||| ||| ||||||||    
T  37162890 cgaatttgcagcagcttcatcttggagacaatcgaggactcaaagttcatgacaagaataat 37162951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 35144425 - 35144295
Alignment:
Q  29 ggaagaattccaaatgatcttgcacgtctttcgcacttgcaatatcttgatctttcatggaatggcctcaagggtacaatccctcatcaatttggaaatc 128  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||||||||| ||  ||  | ||  |||||  ||||||||||||| |||||||||    
T  35144425 ggaagaattccaaatgatcttgcctgtctttcacacttgcaatatcttgatctttaatttaacagactggagggtgaaatccctcatcaacttggaaatc 35144326  T
Q  129 tctctcatttgcagcatcttgatcttagttc 159  Q
    ||||||||||||||||||||||||| |||||    
T  35144325 tctctcatttgcagcatcttgatctcagttc 35144295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 35144348 - 35144220
Alignment:
Q  181 aatccctcatcaacttggaaatctctctcatttgcattaccttgatcttagttcaaattttcttgttggaaccattcctcatcaacttggaagcctttca 280  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||| ||||| |||  |||||| ||| ||||||||||||| ||||||||||||| |    
T  35144348 aatccctcatcaacttggaaatctctctcatttgcagcatcttgatctcagttcgaatcatcttgtcggagccattcctcatcagcttggaagcctttta 35144249  T
Q  281 aatttacaggaacttcatctagaatacaa 309  Q
    ||||| ||||   ||||||| ||||||||    
T  35144248 aatttgcaggtgtttcatcttgaatacaa 35144220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 3025086 - 3024925
Alignment:
Q  2 cttgacctccaaagttcatttcgtggcggaagaattccaaatgatcttgcacgtctttcgcacttgcaatatcttgatctttcatggaatggcctcaagg 101  Q
    ||||| |||||| ||||||||  ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||   ||||||||  |||    
T  3025086 cttgatctccaaggttcatttgatgggggaagaattccaaaggatcttgctcgtctttcgcacttgcaatatcttgatctttcagacaatggccttgagg 3024987  T
Q  102 gtacaatccctcatcaatttggaaatctctctcatttgcagcatcttgatcttagttcaaat 163  Q
    ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||    
T  3024986 gtacaatccctcatcaacttggaaatctctctcatttgcagtaccttgatcttagttcaaat 3024925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 165 - 325
Target Start/End: Complemental strand, 3024998 - 3024838
Alignment:
Q  165 atggccttgctggaacaatccctcatcaacttggaaatctctctcatttgcattaccttgatcttagttcaaattttcttgttggaaccattcctcatca 264  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||  |||||| ||| || ||     
T  3024998 atggccttgagggtacaatccctcatcaacttggaaatctctctcatttgcagtaccttgatcttagttcaaatgatcttgcgggaaccgttcttcgtcc 3024899  T
Q  265 acttggaagcctttcaaatttacaggaacttcatctagaatacaatgaaggactcaaagtt 325  Q
    ||||||||| |||||||| || |||||||||||||||| ||||||| ||||||| ||||||    
T  3024898 acttggaagtctttcaaaattgcaggaacttcatctaggatacaatcaaggacttaaagtt 3024838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 29723735 - 29723536
Alignment:
Q  1 ccttgacctccaaagttcatttcgtggcggaagaattccaaatgatcttgcacgtctttcgcacttgcaatatcttgatctttcatggaatggcctcaag 100  Q
    ||||||||||||| ||||||||  || |||||||| ||||||||||||||  || ||||| || |||||||||||||||||||||  |||| | ||| ||    
T  29723735 ccttgacctccaaggttcatttgatgacggaagaaatccaaatgatcttgttcgcctttcacagttgcaatatcttgatctttcagagaatcgtctcgag 29723636  T
Q  101 ggtacaatccctcatcaatttggaaatctctctcatttgcagcatcttgatcttagttcaaattatggccttgctggaacaatccctcatcaacttggaa 200  Q
    | |||||||||| ||||| |||||||| |||||||||||  | | |||||||||||||  ||| |||  |||| |||||| || ||||||||||||||||    
T  29723635 gttacaatcccttatcaacttggaaatttctctcatttgttgtaccttgatcttagttataataatgttcttgttggaaccattcctcatcaacttggaa 29723536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 29723632 - 29723523
Alignment:
Q  179 acaatccctcatcaacttggaaatctctctcatttgcattaccttgatcttagttcaaatt---ttcttgttggaaccattcctcatcaacttggaagcc 275  Q
    ||||||||| |||||||||||||| |||||||||||   ||||||||||||||||  |||    ||||||||||||||||||||||||||||||||||||    
T  29723632 acaatcccttatcaacttggaaatttctctcatttgttgtaccttgatcttagttataataatgttcttgttggaaccattcctcatcaacttggaagcc 29723533  T
Q  276 tttcaaattt 285  Q
    ||||||||||    
T  29723532 tttcaaattt 29723523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 18035611 - 18035667
Alignment:
Q  175 tggaacaatccctcatcaacttggaaatctctctcatttgcattaccttgatcttag 231  Q
    ||||| ||||||||||||| |||||||||| ||  |||||| ||| |||||||||||    
T  18035611 tggaaaaatccctcatcaaattggaaatctttccaatttgctttatcttgatcttag 18035667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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