View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_18 (Length: 339)
Name: NF6074_low_18
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 52784048 - 52784369
Alignment:
| Q |
13 |
aatatgtgttatattattaaagggagaagctgtgtgtaattcggtccttattggaaatcacataaggcgtaagtgatatccaataagaaccaatcacatt |
112 |
Q |
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| T |
52784048 |
aatatgtgttatattattaaagggagaagctgtgtgtaattcggtccttattggagatcacataaggcgtaagtgatatccgataagaaccaatcacatt |
52784147 |
T |
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| Q |
113 |
taacat----catcattttgtgaatatgcttttcgcaacaacgggcattttcaaacaaaaaatgacaaaaggtgcataaaaatgtcagcatataaccaaa |
208 |
Q |
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| T |
52784148 |
taacatgcatcatcattttgtgaagatgcttttcgcgacaacgggcattttcaaacaaaaaatgacaaaaggttcataaaaatgtcagcatataaccaaa |
52784247 |
T |
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| Q |
209 |
taaattctcacttgccacacaaagtagtaaaatgcccatgttcttgacggagctcgtatattagtgcttgcattacgctggtttataatttttgcattta |
308 |
Q |
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| T |
52784248 |
taaattctcacttgccacacaaagtagtaaaatgcccatgttcttgacggagctcgtatattagtgcttgcattacgctggtttataatttttgcattta |
52784347 |
T |
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| Q |
309 |
tcatcgtaaattttttaaagtg |
330 |
Q |
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| T |
52784348 |
tcatcgtaaattttttaaagtg |
52784369 |
T |
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