View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_2 (Length: 787)
Name: NF6074_low_2
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 362 - 643
Target Start/End: Complemental strand, 48569421 - 48569141
Alignment:
| Q |
362 |
aattcataatcaattttcacacagaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttc-agaagatgtcaa |
460 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48569421 |
aattcataatcaattttcaca--gaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttccagaagatgtcaa |
48569324 |
T |
|
| Q |
461 |
ccttccaagagtagaccaaagtaccataattttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
560 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48569323 |
ccttccaagagtagaccaaagtaccataattttctatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
48569224 |
T |
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| Q |
561 |
attggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
643 |
Q |
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| T |
48569223 |
attggagcatttccaaccaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 48569731 - 48569420
Alignment:
| Q |
19 |
cttccaacatccactaaatcatatacaagcctccagaatttgcgtttaatnnnnnnncatattgttgagctcataaacctgcattcatgttcttgatgta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48569731 |
cttccaacatccactaaatcatatacaagcctccagaatttgcgtttaataaaaaa-cattttgttgagctcataaacctgcattcatgttcttgatgta |
48569633 |
T |
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| Q |
119 |
attaaataaactcatttgaaatacatttaactaaacagccgtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatca |
218 |
Q |
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| T |
48569632 |
attaaataaactcatttgaaatacatttaaccaaacagccgtcatcagccaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatca |
48569533 |
T |
|
| Q |
219 |
attcatcctctgtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaatttctatcg |
318 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
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| T |
48569532 |
attcatcctttgtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggact------tgaagaagaatttatatcg |
48569439 |
T |
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| Q |
319 |
gaagatttcagcaaaggaa |
337 |
Q |
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||||||||||||||||||| |
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| T |
48569438 |
gaagatttcagcaaaggaa |
48569420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 702 - 774
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
| Q |
702 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
774 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
48569018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 159 - 355
Target Start/End: Original strand, 10821422 - 10821612
Alignment:
| Q |
159 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatcctctgtcacccaaacaaaatcctcgcattttct |
258 |
Q |
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|||||||||||||||| |||||||| ||||| || || ||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||| | |
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| T |
10821422 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctctggaaaatactcaatcaattcatccttagtcacccaaacaaagtcctcgcatttgcc |
10821521 |
T |
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| Q |
259 |
aaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaatttctatcggaagatttcagcaaaggaaaaaatgagcaagtataat |
355 |
Q |
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|| ||| ||||||||||||||||||||||| || | ||| ||||||||||| | |||||||| ||||||||||| |||||||||||||||| |
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| T |
10821522 |
aatgtcgaacttgtttttagcaattacttgtgatt------tgaagaagaatttctgacagaagatttaagcaaaggaaagaatgagcaagtataat |
10821612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 451 - 637
Target Start/End: Original strand, 10821749 - 10821937
Alignment:
| Q |
451 |
aagatgtcaaccttccaagagtagaccaaagtaccataa--ttttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaaca |
548 |
Q |
| |
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|||||||||||||||||| |||||| |||||||| || ||| | | || ||||||||||||||| ||||||| || ||||| |||||||||||| |
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| T |
10821749 |
aagatgtcaaccttccaatagtagattgaagtaccacaaaatttcctttaaacataccttaaaagatgttgatcctgtctgctcttctttaggctgaaca |
10821848 |
T |
|
| Q |
549 |
accatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
637 |
Q |
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||| |||||||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||||||| ||||| || ||||||||||| |
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| T |
10821849 |
accgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 36145966 - 36145837
Alignment:
| Q |
159 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatcctctgtcacccaaacaaaatcctcgcattttct |
258 |
Q |
| |
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|||||||||||||||| |||||||| ||||| || || ||||| ||||||||||||||||||||||||| |||||||||||||| ||||| | ||| | |
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| T |
36145966 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctcaggaaaatactccatcaattcatccttagtcacccaaacaaagtcctcacctttgcc |
36145867 |
T |
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| Q |
259 |
aaagtcaaacttgtttttagcaattacttg |
288 |
Q |
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|| ||| ||||||||||||||||||||||| |
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| T |
36145866 |
aatgtcgaacttgtttttagcaattacttg |
36145837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 502 - 637
Target Start/End: Complemental strand, 36145584 - 36145449
Alignment:
| Q |
502 |
ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc |
601 |
Q |
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||||||||||||||| ||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
36145584 |
ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcc |
36145485 |
T |
|
| Q |
602 |
tatgactgatttcaatgcagactcagcacactgcaa |
637 |
Q |
| |
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| |||||||||||| ||||| || ||||||||||| |
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| T |
36145484 |
caagactgatttcaaggcagattctgcacactgcaa |
36145449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 709 - 772
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
| Q |
709 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
772 |
Q |
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||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg |
10822265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 709 - 772
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
| Q |
709 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
772 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg |
36145131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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