View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6074_low_20 (Length: 332)
Name: NF6074_low_20
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 46940558 - 46940250
Alignment:
| Q |
18 |
agctacaaagtagtagataatagattgtgaccacattaggggggtaccccaacattagaaggtggtaagggtaggggtccttagatgttggctgtctaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46940558 |
agctacaaagtagtagataatagattgtgaccacattaggggggtaccccaacattagaaggtggtaagggtaggggtccgtagatgttggctgtctaga |
46940459 |
T |
|
| Q |
118 |
agcaaactcactggggacaaatatacccctcatattaatgattagtcccacttcacaatcatcattattattcactaaaccaatatatatcaaatctcat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46940458 |
agcaaactcactggggacaaatatacccctcatattaatgattagtcccacttcacaatcaccattattattcactaaaacaatatatatcaaatctcat |
46940359 |
T |
|
| Q |
218 |
ataacaatattaacactaccatttgttttgttatatatctttcattcattagtattactctaacaaaaacacatgggtttgcctttattaatatgtcagc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46940358 |
ataacaatattaacactaccatttgttttgttatatatctttcattcattagtattactctaacaaaaacacatgggtttgcctttattaatatgtcagc |
46940259 |
T |
|
| Q |
318 |
ttcttctca |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
46940258 |
ttcttctca |
46940250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University