View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_23 (Length: 320)
Name: NF6074_low_23
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 52054465 - 52054771
Alignment:
| Q |
1 |
ccaaagggaccttttggtagtcttgttactaattagnnnnnnnnatttgagtaaacccttcgaatcagtctctgacattttaagacactcttaaatggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52054465 |
ccaaagggaccttttggtagtcttgttactaatttgttttttt-atttgagtaaacccttcgaatcagtctctgacattttaagacactcttaaatagat |
52054563 |
T |
|
| Q |
101 |
cattgatatgggagattaaagttaacaatagatggttaatgatatagacccaattgatagtaagtcgtttaaaaagatctaattgacagcaagtgaataa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52054564 |
cattgatatgggagattaaagttaacaatagatggttaatgatatagacccaattgatagtaagtcgtttaaaaagatctaattgacagtaagtgaataa |
52054663 |
T |
|
| Q |
201 |
atttgatgaccaacttaacaatttaataaagttgaagatcttttggaaatattcataatctcggagatttatttgatagtactttgatggtttattcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
52054664 |
atttgatgaccaacttaacaatttaataaagttgaagatcttttggaaatattcataatctcgaagatttattagatagtactttgatggtttattcttt |
52054763 |
T |
|
| Q |
301 |
tttatttt |
308 |
Q |
| |
|
|||||||| |
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| T |
52054764 |
tttatttt |
52054771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 1764226 - 1764289
Alignment:
| Q |
198 |
taaatttgatgaccaacttaacaatttaataaagttgaagatcttttggaaatattcataatct |
261 |
Q |
| |
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||||||||| ||||||||||| | ||||||||||| | ||||||||| ||| ||||||||||| |
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| T |
1764226 |
taaatttgaagaccaacttaatagtttaataaagtcggagatctttttaaaacattcataatct |
1764289 |
T |
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