View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_29 (Length: 274)
Name: NF6074_low_29
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 52784464 - 52784737
Alignment:
| Q |
1 |
agctagataaaggcaataataagctagaaattaatcaactgtattattctacactacgttgcaaaatacaaaatctgcttgtgtagatgagataacatat |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52784464 |
agctagataaaggcaataataagctagaaatcaatcatctgtattattctacactacgttgcaaaatacaaaatctgcttgtgtagatgagataacatat |
52784563 |
T |
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| Q |
101 |
tgccacaagaaaaagagggagttatgnnnnnnngattgtcttcactcttcaagcattggttgtggttggttccaaaagtggctttcttagctccttgatc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52784564 |
tgccacaagaaaaagagggagttatgaaaaaaagattgtcttcactcttcaagcattggttgtggttggttccaaaagtggctttcttagctccttgatc |
52784663 |
T |
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| Q |
201 |
agttagttatagatgaagtgacatccgtcgtagcctgttgagaagcaaaaggtagcaattatgagtttgttact |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52784664 |
agttagttatagatgaagtgacatccgtcgtagcctgttgagaagcaaaaggtagcaattatgagtttgttact |
52784737 |
T |
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