View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6074_low_3 (Length: 694)
Name: NF6074_low_3
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 143 - 677
Target Start/End: Original strand, 36841185 - 36841718
Alignment:
| Q |
143 |
gctgctccctattcatgagcaatgagtgtagattagtcttgannnnnnncttgaggctaagagaaattcaagaaagcttgaaaaagcattgttttgtcag |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841185 |
gctgctccctattcatgagcaatgagtgtagattagtcttgatttttttcttgaggctaagagaaattcaagaaagcttgaaaaagcattgttttgtcag |
36841284 |
T |
|
| Q |
243 |
cagagaatatttcaaatttcatatgctatattatatttttgctttcattattttgacttcataaatggccatttcagtgtggtgattatcattattgtca |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
36841285 |
cagagaatatttcaaatttcatatgctatattatatttttgctttcattattttgacttcataaatggccatttcagcgtggt--ttatcattattgtca |
36841382 |
T |
|
| Q |
343 |
cttaatgtgggagtgttttggtagttcctgcattataattaaattggggtctacaaaaataaatattttggagatctatgtgatagatagcatcacaact |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841383 |
cttaatgtgggagtgttttggtagttcctgcattataattaaattggggtctacaaaaataaatattttggagatctatgtgatagatagcatcacaact |
36841482 |
T |
|
| Q |
443 |
gcaattgtggccaaattttattatattttgttgtaatatcaacatcttcagtaacactatgagatggtctcaatttatttgagtcatactatgtcatatc |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841483 |
gcaattgtggccaaattttattatattttgttgtaatatcaacatcttcagtaacactatgagatggtctcaatttatttgagtcatactatgtcatatc |
36841582 |
T |
|
| Q |
543 |
aattttaagaacttatcaatttttcacttcaatttgtgacacattattcaatagctaatacttttgtggtggtgaaaaattctttccatgttgcatctac |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841583 |
aattttaagaacttatcaatttttcacttcaatttgtgacacattattcagtagctaatacttttgtggtggtgaaaaattctttccatgttgcatctac |
36841682 |
T |
|
| Q |
643 |
cagacc-tcatctccatgtatatgtcactaacaaac |
677 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36841683 |
cagaccttcatctccatgtatatgtcactaacaaac |
36841718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 36841053 - 36841151
Alignment:
| Q |
11 |
caaaggagtaaaaatattcttctcccattttttagaaataagataagaaaattcatcaagtagtatatagtattaagatgtatctgtctcttcaaacta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841053 |
caaaggagtaaaaatattcttctcccattttttagaaataagataagaaaattcatcaagtagtatatagtattaagatgtatctgtctcttcaaacta |
36841151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University