View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_30 (Length: 264)
Name: NF6074_low_30
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 30083776 - 30083555
Alignment:
| Q |
20 |
gatctagttaaatcaaagtcaactatgatggatacacaaaacacat--gggaattcttcaaagtttgaaactttcatgcataattcatcatcaagatgaa |
117 |
Q |
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| T |
30083776 |
gatctagttaaatcaaagtcaactatgatggatacacaaaacacatatgggaattcttcgaagtttgaaactttcatgcataattcatcatcaagatgaa |
30083677 |
T |
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| Q |
118 |
gttctggtagaaattcaatgctctaattaatgctttgtggattatgtattattactgacagacccttgaagaagaatgacaaaaataaagagttgcaatg |
217 |
Q |
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| T |
30083676 |
gttctggtagaaattcaatgctc-aattaatgctttgtggattatgtattattactgacagacccttgaagaagaatga--------------tgcaatg |
30083592 |
T |
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| Q |
218 |
ctctaattaatccattccaagtagcttgtgtcctatg |
254 |
Q |
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| T |
30083591 |
ctctaattaatccattccaagtagcttgtgtcctatg |
30083555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 16941065 - 16941184
Alignment:
| Q |
20 |
gatctagttaaatcaaagtcaa-ctatgatggatacacaaaacacat--gggaattcttcaaagtttgaaactttcatgcataattcatcatcaagatga |
116 |
Q |
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||||||||||| |||||||||| |||| ||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
16941065 |
gatctagttaagtcaaagtcaaactataatggatacaaaaaacccatctgggaattcttcaaagattgaaactttcatgcataattcatcatcaagaaga |
16941164 |
T |
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| Q |
117 |
agttctggtagaaattcaat |
136 |
Q |
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| T |
16941165 |
agttctggtagaaattcaat |
16941184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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