View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6074_low_31 (Length: 258)
Name: NF6074_low_31
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_31 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 127 - 258
Target Start/End: Original strand, 33223376 - 33223507
Alignment:
| Q |
127 |
gtagacgccatgataatttagtaaaattgaggggcactaaggcagacaccagcaaacaccggacccgctttcaatctgaagtgtcggtgctacgtaatga |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223376 |
gtagacgccatgataatttagtaaaattgagaggcactgacgcagacaccaacaaacaccggacccgctttcaatctgaagtgtcggtgctacgtaatga |
33223475 |
T |
|
| Q |
227 |
caagcacaaacaagtagctagccatgtagcac |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
33223476 |
caagcacaaacaagtagctagccatgtagcac |
33223507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University