View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_4 (Length: 595)
Name: NF6074_low_4
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 53680999 - 53681570
Alignment:
| Q |
1 |
ctggttcaacttgtgtctttgatccattcccccttctatattaatattagtgaatgttaagtttttcctatagaaaaagtagtggccaccctagacttgg |
100 |
Q |
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| T |
53680999 |
ctggttcaacttgtgtctttgatccattcccccttctatattaatattagtgaatgttaagtttttcttataaaaaaagtagtggccaccctagacttgg |
53681098 |
T |
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| Q |
101 |
tatgtgtttggaaatgaggtgcagctagacaattttacggtgaagctgaagctacaaattggagcttctggttttcacggtgaaaatttcaatggaacgc |
200 |
Q |
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| T |
53681099 |
tatgtgtttggaaatgtggtgcagctagacaatttcacggtgaagctgaagctacaaattggagcttctggttttcatggtgaaaatttcaatggaacgc |
53681198 |
T |
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| Q |
201 |
aataattagtctgccaccacatttccaaacataagtatattcatattcatattctcatgcaatttgagtgaacaaatgtgtgtgattccttggcttattt |
300 |
Q |
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| T |
53681199 |
gataattagtctgccaccacatttccaaacataagtatat------tcatattcacatgcaatttgagtgaacaaatgtgtgtgattccttggcttattt |
53681292 |
T |
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| Q |
301 |
tggtatcaagaaatttcaagttcaacaaggaaatatctcaaaagaaaatggtgacataaatctaatgaaattttcaaatagtactagtactaaccataag |
400 |
Q |
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| T |
53681293 |
tggtatcaagaaatttcaagttcaacaaggaaatatctcaaaagaaaatggtgacataaatctaatgaaattttcaaatagtactagtactaaccataag |
53681392 |
T |
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| Q |
401 |
agggatgcggaatcatcatcaaagtattgatggaaccatattcatttctataatagttgatgactgcaaaaacaaatcccttctatctgataattaaata |
500 |
Q |
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| T |
53681393 |
agggatgcggaatcatcatcaaagtattgatggaaccatattcatttctataatagttgatgactgcaaaaacaaatcccttctatctgataattaaata |
53681492 |
T |
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| Q |
501 |
ctagcagcacaaaaacacttgactcaaattttgtgtactcatcgatccttgttgcaatttgatcagcttcacaagttagtct |
582 |
Q |
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| T |
53681493 |
ctagcagcacaaaaacacttgactcaaattttgtgtactc----atccttgttgcaatttgatcagcttcacaagttagtct |
53681570 |
T |
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