View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_5 (Length: 480)
Name: NF6074_low_5
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 3 - 397
Target Start/End: Original strand, 32602190 - 32602573
Alignment:
| Q |
3 |
gtagcagcaatgatcgttgtaggtgccacttgccacctacctaaattgatatacttgtaccctagggcagcaagtccagttgacaccatcgcatcagctg |
102 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32602190 |
gtagcagcaatgatcgttgtagttgccacttgccacctacctaaattgatatacttgtaccctagggcagcaagtccagttgacaccattgcatcagctg |
32602289 |
T |
|
| Q |
103 |
aaatgataaatcaatatagtttagttcaattgaattaaatatatttaaactgtaaaaataatagcttaattagggaacatcataataatgataataaaaa |
202 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
32602290 |
aaatgataaatcaatattgtttacttcaattgaattaaatatatttaaactgtaaaaataatag---------ggaacatcataataatgataataaaca |
32602380 |
T |
|
| Q |
203 |
tatatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaatataattgattaggaaacta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32602381 |
tatatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaatataattgattaggaaacta |
32602480 |
T |
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| Q |
303 |
tatactttcatatgtatttaattggagaaaattatgtgtatttttatgtgagaaacataaaagaaaaaatggatatatttgaatgaaaaatggat |
397 |
Q |
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| T |
32602481 |
tatactttc--atgtatttaattggagaaaattatgtgcatttttatgtgagaatcataaaagaaaaaatggatatatttgaatgaacaatggat |
32602573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 397
Target Start/End: Original strand, 32592045 - 32592431
Alignment:
| Q |
5 |
agcagcaatgatcgttgtaggtgccacttgccacctacctaaattgatatacttgtaccctagggcagcaagtccagttgacaccatcgcatcagctgaa |
104 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32592045 |
agcagcaatgatcgttgtagttgccacttgccacctacctaaattgatatacttgtatcctagggcagcaagtccagttgacaccatcgcatcagctgaa |
32592144 |
T |
|
| Q |
105 |
atgataaatcaatatagtttagttcaattgaattaaatatatttaaactgtaaaaataatagcttaattagggaacatcataataatgataataaaaata |
204 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |
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| T |
32592145 |
atgataaatcaatatagtttagatcaattgaattacatatatctaaactgtaaaaataatggc----ttagggaacatcataataatgataataaacata |
32592240 |
T |
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| Q |
205 |
tatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaatataattgattaggaaactata |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32592241 |
gatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaaaatcataaatataattgattaggaaactatg |
32592340 |
T |
|
| Q |
305 |
tactttcatatgtatttaattggagaaaattatgtgtatttttatgtgagaaacataaaagaaaaaatggatatatttgaatgaaaaatggat |
397 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
32592341 |
tactttc--atgtatttaattggagaaaattatgtgtatttttacgtgtgaatcataaaagaaaaaatggatatatttgaatgaacaatggat |
32592431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 466
Target Start/End: Original strand, 32592436 - 32592472
Alignment:
| Q |
430 |
cataccccatgggaggtgtctgaccaagtccattttg |
466 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32592436 |
cataccccatgggaggtgtctgaccaagtccattttg |
32592472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 466
Target Start/End: Original strand, 32602578 - 32602614
Alignment:
| Q |
430 |
cataccccatgggaggtgtctgaccaagtccattttg |
466 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32602578 |
cataccccatgggaggtgtctgaccaagtccattttg |
32602614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 35124833 - 35124925
Alignment:
| Q |
202 |
atatatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaatataattgatta |
294 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35124833 |
atatatacctgtatctcggattaaactttcattaatatcacaaccgaaatggttccaactattccatctgaacatcatatgtataattgatta |
35124925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 34579652 - 34579740
Alignment:
| Q |
206 |
atacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaatataattgatta |
294 |
Q |
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|||||||| ||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||| |
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| T |
34579652 |
atacctgtgtcttggattaaactttcattgatatcacaaccaaaatggttccagctattccatctgatcatcatatgtataattgatta |
34579740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 35125041 - 35125097
Alignment:
| Q |
410 |
tatagataaagaaggtatagcataccccatgggaggtgtctgaccaagtccattttg |
466 |
Q |
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|||| ||| ||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35125041 |
tatacatagagagggtataacataccccatgggaggtgtctgaccaagtccattttg |
35125097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 34579503 - 34579588
Alignment:
| Q |
40 |
tacctaaattgatatacttgtaccctagggcagcaagtccagttgacaccatcgcatcagctgaaatgataaatcaatatagttta |
125 |
Q |
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|||||||||| ||||| |||||||||| |||||||| |||||||||||||| || || |||||||| ||||| |||| |||||| |
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| T |
34579503 |
tacctaaattaatatatttgtaccctaaagcagcaaggccagttgacaccattgcgtcggctgaaataataaagtaataaagttta |
34579588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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