View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_8 (Length: 441)
Name: NF6074_low_8
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 424
Target Start/End: Complemental strand, 6117806 - 6117397
Alignment:
| Q |
13 |
atactagtactattattgttgcaattgtaggtcagtattattaattttggttttgtccatggatatgaatttaaaagatgatggattttttggataggcc |
112 |
Q |
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| T |
6117806 |
atactagtactattattgttgcaattgtaggccagtattattaattttggttttgaccatggatatgaatttaaaagatgatggattttttggataggcc |
6117707 |
T |
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| Q |
113 |
atatcaaacctagctataaccttctattctacaaggacgattatcactactaacaataataatgttggtaaagatatatgt--tttgaatgcatatgttt |
210 |
Q |
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| T |
6117706 |
atatcaaaccta----taaccttctactctacaaggacgattatcactactaacaataataatgttggtaaagatatatatattttgaatgcatatgttt |
6117611 |
T |
|
| Q |
211 |
ataagtttcttgtatagtcctttaatggcactttagtcaactgcaaatttttctatgtatacaatcgtctacatattgtaaaggnnnnnnnaactgatat |
310 |
Q |
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| T |
6117610 |
ataagtttcttgtatagtcctttaatggcactttagtcaactgcaaatttttctatgtatacaatcgtctacatattgtaaaggtttttttaactgatat |
6117511 |
T |
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| Q |
311 |
ttattctagctatatataaatgaacaaccataaattataagttttttaaatagtcggtttatcatatgaaaaatatttagggtgagaagatggttttgaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6117510 |
ttattctagctatatataaatgaacaaccataaattataagttttttaaatactcagtttatcatatgaaaaatatttagggtgagaagatggttttgaa |
6117411 |
T |
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| Q |
411 |
tccaacggaatact |
424 |
Q |
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| T |
6117410 |
tccaacggaatact |
6117397 |
T |
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