View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6074_low_9 (Length: 439)
Name: NF6074_low_9
Description: NF6074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6074_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 32338848 - 32339083
Alignment:
| Q |
10 |
aataatataaaagggattggggtgagacagttagccacgagttaaccatg-taaattaattcatttatccatggtcactataatatggctaaactacgcc |
108 |
Q |
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| T |
32338848 |
aataatataaaagggattggggtgagacagttagccacgggttaaccatggtaaattaattaatttatccatggtcactataatatggctaaactacgcc |
32338947 |
T |
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| Q |
109 |
acattgatttatagtatagagatcaaccagcatcaaacaaacatcatcaattttctgtttttattaagtattgatttaattgtcgagtagaaaacaagga |
208 |
Q |
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| T |
32338948 |
acattgatttatagtatagagaccaaccagcatcaaacaaacatcatcaattttctgtttttattaagtattgatttaattgtcgagtagaaaacaagga |
32339047 |
T |
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| Q |
209 |
aggttatttactatttcattatctgggtgtatattt |
244 |
Q |
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| T |
32339048 |
aggttatttactattttattatctgggtgtatattt |
32339083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 256 - 439
Target Start/End: Original strand, 32339120 - 32339303
Alignment:
| Q |
256 |
atccatccaacaattctctccctcactcacgaatcaacatgaataaattgatatcgttcaaaaaactattttgcaagtcttaattatttccgactcttgt |
355 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32339120 |
atccatccaacaattctctccctcactcacaaatcaacatgagtaaattgatatcgttcaaaaaactattttgcaagtcttaattatttccgactcttgt |
32339219 |
T |
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| Q |
356 |
ctaaaattagagaaaacaagtgggaaattaggtagttcacctgatttgagccaaggattaaggagttggaagttcagggttcaa |
439 |
Q |
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| T |
32339220 |
ctaaaattagagaaaacaagtgggaagttaggtaattcacctgatttgagctaaggattaaggagttgaaagttcaaggttcaa |
32339303 |
T |
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