View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6075_low_4 (Length: 400)
Name: NF6075_low_4
Description: NF6075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6075_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 75 - 391
Target Start/End: Original strand, 19395628 - 19395951
Alignment:
| Q |
75 |
tttgtgaagttatgagattgaagatgtgccaatgtctaatatcgacattaatcacttctattttcttaaattattgacatgtgtctgtgtcatatcttgt |
174 |
Q |
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| T |
19395628 |
tttgtgaagttatgagattgaagatgtgccaatgtctaatatcgacattaatcacttctattttcttaaattattgacatgtgtctgtgtcatatcttgt |
19395727 |
T |
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| Q |
175 |
gtctaagtatgtgtcagtgattgatagttatatcgcttccagtgaagtgaagcactactccgatgaaatttatgtgtctggataaattatagaataatta |
274 |
Q |
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| T |
19395728 |
gtctaagtatgtgtcagtgattgatagttatatcgcttccagtgaagtgaagcactactccgatgaaatttatgtgtctggataaattatagaataatta |
19395827 |
T |
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| Q |
275 |
ttggttcaagtcattctgcttgctttgtaattacaaaataagcatat----ctgttcca---aaagtacaaatataactatgagttttatttcaccataa |
367 |
Q |
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| T |
19395828 |
ttggttcaagtcattctgcttgctttgtaattacaaaataagcatatatatctgttccatcaaaagtacaaatataactatgagttttatttcaccataa |
19395927 |
T |
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| Q |
368 |
caactctagtcttttgagtataat |
391 |
Q |
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| T |
19395928 |
caactctagtcttttgagtataat |
19395951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 18871349 - 18871210
Alignment:
| Q |
160 |
tgtgtcatatcttgtgtctaagtatgtgtcagtgattgatagttatatcgcttccagtgaagtgaagcactactccgatgaaatttatgtgtctggataa |
259 |
Q |
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| T |
18871349 |
tgtgtcatgtcttatgtatatgtatgtgcctgtgattgaaagatatgccccttccagtgaagtgaagcagtactccgatgaaatttatgtgtctggataa |
18871250 |
T |
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| Q |
260 |
att-atagaataattattggttcaagtcattctgcttgct |
298 |
Q |
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| T |
18871249 |
attaaaagaataataattggttcaagtcatgttgcttgct |
18871210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 19402145 - 19402205
Alignment:
| Q |
18 |
agtttgagttgagttatggtttaaactataaattcaaatcttacatcgaagtttatatttg |
78 |
Q |
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| T |
19402145 |
agtttgagttgagttatggttgaaactataaactaaaaacttacattgaaatttatatttg |
19402205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 18166981 - 18167029
Alignment:
| Q |
299 |
ttgtaattacaaaataagcatatctgttc---caaaagtacaaatataa |
344 |
Q |
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| T |
18166981 |
ttgtaattacaaaataagcatatctgttccatcaaaagtacaaatataa |
18167029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 18167354 - 18167393
Alignment:
| Q |
352 |
ttttatttcaccataacaactctagtcttttgagtataat |
391 |
Q |
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| T |
18167354 |
ttttttttcactataacaactctagtcttttgagtataat |
18167393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 18871407 - 18871377
Alignment:
| Q |
119 |
acattaatcacttctattttcttaaattatt |
149 |
Q |
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| T |
18871407 |
acattaatcacttctattttcttaaattatt |
18871377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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