View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_102 (Length: 291)
Name: NF6076_high_102
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_102 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 3355165 - 3355430
Alignment:
| Q |
17 |
aaccatcactcatccttaacaacatgtttagaaattgaggcctctagctctttagctttttcgtcattaatgccaaggttggatagtatcttgtgacctg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3355165 |
aaccatcactcatccttaacaacatgtttagaaattgaggcctctagctctttagctttttcgtcattaatgccaagtttggatagtatcttgtgacctg |
3355264 |
T |
|
| Q |
117 |
gggaatccacatcagaccaaatgccaagaattatgtgcgctgtggttacttccccaccatcaactgcaagtcacaatgaatttataaaaaggattatttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3355265 |
gggaatccacatcagaccaaatgccaagaattatgtgtgctgtggttacttccccaccatcaactgcaagtcac-atgaatttataaaaaggattatttt |
3355363 |
T |
|
| Q |
217 |
tgtttgcactaagccatataatattttataagaatcaccagtttcagaagaaaaagagatgatgatg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3355364 |
tgtttgcactaagccatataatattttataagaatcaccagtttcagaagaaaaggagatgatgatg |
3355430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 9126880 - 9126693
Alignment:
| Q |
58 |
ctctagctctttagctttttcgtcattaatgccaaggttggatagtatcttgtgacctggggaatccacatcagaccaaatgccaag-----aattatgt |
152 |
Q |
| |
|
|||||||| |||| | |||||| | || | |||||||||| ||||||||||||||||| ||||||||| | || |||||||| ||| |||||||| |
|
|
| T |
9126880 |
ctctagctgtttaacattttcgccgtttaagccaaggttgtatagtatcttgtgacctaaggaatccactttag-ccaaatgcgaagcgaagaattatgt |
9126782 |
T |
|
| Q |
153 |
gcgctgtggttactt-ccccaccatcaactgcaagtcacaatgaatttataaaaaggattatttttgtttgcactaagccatataatattt |
242 |
Q |
| |
|
|| || ||| || ||||||||||| || ||||||||| |||||| |||||||| | ||||||| | | ||||||||||||||||||| |
|
|
| T |
9126781 |
atgcattgattattttccccaccatcatcttcaagtcaca-tgaattcataaaaagaactattttt-tgggaactaagccatataatattt |
9126693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University