View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_109 (Length: 275)
Name: NF6076_high_109
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_109 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 4999333 - 4999090
Alignment:
| Q |
14 |
atcatggtgtaaataagccaaccctttagcagcacctaaagcaattccaaatctcttagaccaatccaactccacaaacttctcctcatgcaaaacatca |
113 |
Q |
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| T |
4999333 |
atcatggtgtaaataagccaaccctttagcagcacctaaagcaattccaaatctcttagaccaatccaactccacaaacttcccctcatgcaaaacatca |
4999234 |
T |
|
| Q |
114 |
cctaaactcccattttccataaactcatacaccaatattctgaaatcatcacaactacaacaaaacaacagtttcactatattagcatgtctaattctac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4999233 |
cctaaactcccattttccataaactcatacaccaatattctgaaatcatcacaactacaacaaaacaacagtttcactatattagcatgtctaattctac |
4999134 |
T |
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| Q |
214 |
ccaatgtttcaatctctgacttaaactcagattctgtatcaggt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4999133 |
ccaatgtttcaatctctgacttaaactcagattctgtatcaggt |
4999090 |
T |
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