View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_110 (Length: 274)
Name: NF6076_high_110
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_110 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 6568167 - 6567912
Alignment:
| Q |
1 |
atgtaccatgtgtgaaaggggctgccttccccttctttcaaggcattcaactgcttcctttctcagttcaacaggtagctgaaggcagacccaatccaac |
100 |
Q |
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| T |
6568167 |
atgtaccatgtgtgaaagaggctgccttccccttctttcaaggcattcaactgcttcctttctcagttcaacaggtagctgaaggcagacccaatccaac |
6568068 |
T |
|
| Q |
101 |
aaagattccaagtcctttgcaaagtcaagtaaaaaccagtcaagtatctttggaattattaacttgtttgttttcgttatgccaactgctgcctgtaaat |
200 |
Q |
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| T |
6568067 |
aaagattccaagtcctttgcaaagtcaagtaaaaaccagtcaagtatctttggaattattaacttgtttgttttcgttatgccaactgctgcctgtaaat |
6567968 |
T |
|
| Q |
201 |
aatctctctttgctgcttctaactcattatcaacctgtgatgctgtgtacaccctt |
256 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6567967 |
aatctctctttgctgcttctaactcattatcaacttgtgatgctgtgtacaccctt |
6567912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 34257574 - 34257800
Alignment:
| Q |
30 |
cccttctttcaaggcattcaactgcttcctttctcagttcaacaggtagctgaaggcagacccaatccaacaaagattccaagtcctttgcaaagtcaag |
129 |
Q |
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| T |
34257574 |
cccttccttcaaggcatttaactgcttggtttcttatttcatctggtaattggagacaaatccagtccaataaagaatcaaggtcctttgcaaaatctag |
34257673 |
T |
|
| Q |
130 |
taaaaaccagtcaagtatctttggaattattaacttgtttgttttcgttatgccaactgctgcctgtaaataatctctctttgctgcttctaactcatta |
229 |
Q |
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|||| |||| || | | ||| ||||||| || ||||||||||| || || |||| || || |||||||||||||||||||||||||||||||||||| |
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| T |
34257674 |
taaataccaatccaacaacttgggaattagtattttgtttgtttttgtaattccaattgaagcttgtaaataatctctctttgctgcttctaactcatta |
34257773 |
T |
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| Q |
230 |
tcaacctgtgatgctgtgtacaccctt |
256 |
Q |
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||||| ||||||||||| ||||||||| |
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| T |
34257774 |
tcaacttgtgatgctgtatacaccctt |
34257800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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