View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_111 (Length: 274)
Name: NF6076_high_111
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_111 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5799845 - 5800053
Alignment:
| Q |
1 |
atgagtgaggaatgcgcacataagtannnnnnnctctcattcttttaacgaaataagatgaaaagaaatgaaatagcgtacatgccttcttgagcaaggt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5799845 |
atgagtgaggaatgcgcacataagtatttttttctctcattcttttaacgaaataagatgaaaagaaatgaaatagcgtacatgccttcttgagcaaggt |
5799944 |
T |
|
| Q |
101 |
aacagcggtagtcccactgccataagattccatgaaatattgcaatttgagttcgttgtccataaacttagacgctttcaaaaatgattctctcaatatc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5799945 |
aacagcggtagtcccactgccataagattccatgaaatattgcaatttgagttcgttgtccataaacttagacgctttcaaaaatgattctctcaatatc |
5800044 |
T |
|
| Q |
201 |
tcgaaatgg |
209 |
Q |
| |
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||||||||| |
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| T |
5800045 |
tcgaaatgg |
5800053 |
T |
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