View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_112 (Length: 273)
Name: NF6076_high_112
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_112 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 38220432 - 38220686
Alignment:
| Q |
1 |
tgtatattttgtgaaccgactgatcttgatctaacttttattgtgcatcgactgcgtgtttcttgatgaatttgtttacctttcaatcatgttctgagtt |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38220432 |
tgtatattttgtgaactgactgatcttgatctaacatttattgtgcatcgactgcgtgtttcttgatgaatttgtttaccttgcaatcatgttctgagtt |
38220531 |
T |
|
| Q |
101 |
cattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaaca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38220532 |
cattccttttgaattatctgatagtttcaaagtatcagtaacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaaca |
38220631 |
T |
|
| Q |
201 |
gtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgc |
255 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
38220632 |
gtgtatcttaagtagaggcttctctttggacgctcaaaaccttccttcaacttgc |
38220686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 38238416 - 38238596
Alignment:
| Q |
75 |
tttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataa |
174 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
38238416 |
tttaccttgcagtcatgatctgagttcattccttttgaattatctgatagtttcaaagtatcagtaacatcaagtatatatatcttaacaggcactataa |
38238515 |
T |
|
| Q |
175 |
aatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgc |
255 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38238516 |
aatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaaccttccttcaacttgc |
38238596 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 38243280 - 38243534
Alignment:
| Q |
2 |
gtatattttgtgaaccgactgatcttgatctaacttttattg-tgcatcgactgcgtgtttcttgatgaatttgtttacctttcaatcatgttctgagtt |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||| || |||| ||||| ||||| ||||||||||||||||| |||||||| |||||||| || |||| |
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|
| T |
38243280 |
gtatattttgtgaactgactggtcttgatccaacattcattgatgcattgactgtgtgtttcttgatgaattcatttaccttgcaatcatgatcaaagtt |
38243379 |
T |
|
| Q |
101 |
cattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaaca |
200 |
Q |
| |
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| |||||||||| ||||||||| |||||| | |||| || ||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38243380 |
cgttccttttgagttatctgattgtttcatactatcggtaacatcaattacatatatcttaagaggcactataaaatcatcccaatcaacccatttaaca |
38243479 |
T |
|
| Q |
201 |
gtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38243480 |
gtgtatcttaagtagaggcttctctttggaccctcaaaaccttccttcaacttgc |
38243534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 57 - 255
Target Start/End: Original strand, 38226869 - 38227067
Alignment:
| Q |
57 |
tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatata |
156 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||| | |||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
38226869 |
tgtttcttaatgaattcatttaccttgcaatcatggtttgagttcaatccttttgaatcatctgatggtttcaaagtatcagtaacatcaagtatatata |
38226968 |
T |
|
| Q |
157 |
tcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgc |
255 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38226969 |
tcttaacaggcactataaaatcatcccaatcaacccattttacagtgtatcttaggtagagacttctctttggaccctcaaaaccttccttcaacttgc |
38227067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 57 - 255
Target Start/End: Original strand, 38253599 - 38253797
Alignment:
| Q |
57 |
tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatata |
156 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||| |||||||||| | ||||||||| ||||||| |||||||||||||||| ||||||| |||||||| |
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|
| T |
38253599 |
tgtttcttaatgaatttacttaccttgcaatcatggtctgagttcaattcttttgaatcatctgatggtttcaaagtatcagtaacatcaattatatata |
38253698 |
T |
|
| Q |
157 |
tcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgc |
255 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
38253699 |
tcttaacaggcactataaaatcatcccaatcaacccatttcactgtgtatcttaagtagaggtttctctttggaccctcaaaaccttccttcaacttgc |
38253797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 57 - 255
Target Start/End: Original strand, 38248484 - 38248682
Alignment:
| Q |
57 |
tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatata |
156 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||| || |||||||||||| |||||||| |
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|
| T |
38248484 |
tgtttcttgatgaatgcatttaccttgcaatcatgatctgatttcattccttttgaatcatctgatagtttcaaactaccagtgacatcaattatatata |
38248583 |
T |
|
| Q |
157 |
tcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgc |
255 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| || || ||| |||||||||| ||||||||||| || || || ||| ||||||||||||||| |
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|
| T |
38248584 |
tcttaacgggcactataaaatcatcccaatcaacccactttactgtgcatcttaagtaaaggcttctcttaggtccttcgaaaccttccttcaacttgc |
38248682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 58 - 250
Target Start/End: Original strand, 38214447 - 38214639
Alignment:
| Q |
58 |
gtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatat |
157 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| || ||||||| ||||||||||| ||||||| |||||||| ||||||| ||||||| ||||||||| |
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|
| T |
38214447 |
gtttcttgatgaattcatttaccttgcaatcatgatccgagttcaatccttttgaatcatctgatggtttcaaactatcagtaacatcaattatatatat |
38214546 |
T |
|
| Q |
158 |
cttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaa |
250 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
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|
| T |
38214547 |
cttcacaggcacaataaaatcatcccaatcgacccattttacagtgtatcttagatagagacttctctttggcccctcaaaaccttccttcaa |
38214639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 17455117 - 17455297
Alignment:
| Q |
75 |
tttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataa |
174 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||| ||| ||||| ||| ||||||| |
|
|
| T |
17455117 |
tttaccttacaatcatgatctgagttcattccttttgaatcatctgatagtttcaaactatcagtaacatcaattatgtatgtcttaagaggaactataa |
17455216 |
T |
|
| Q |
175 |
aatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgc |
255 |
Q |
| |
|
| |||||||||||||||||||| | ||||| | | || || ||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
17455217 |
attcatcccaatcaacccatttgattttgtatttcagataaagacttctctttggtcccttaaaaccttccttcaacttgc |
17455297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 17434002 - 17434197
Alignment:
| Q |
60 |
ttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatct |
159 |
Q |
| |
|
||||||||||| | |||||||| |||||||| ||||||||| |||||||||||| || ||||||||| ||| ||||||| ||||||| ||| ||| || |
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|
| T |
17434002 |
ttcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatcatttgatagttttaaactatcagtaacatcaattatgtatgcct |
17434101 |
T |
|
| Q |
160 |
tagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgc |
255 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||| | ||||| | | ||||| ||||||||||| ||||||||| || |||||||||||| |
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|
| T |
17434102 |
taacaggcactataaaatcatcccaatcaatccatttgattttgtatttcagatagagacttctctttggtccctcaaaacctaccttcaacttgc |
17434197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 21547063 - 21547011
Alignment:
| Q |
102 |
attccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatata |
154 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
21547063 |
attcctttagacttatctgatagcttcaaagtatcagtcacatcaaatatata |
21547011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 11479357 - 11479291
Alignment:
| Q |
100 |
tcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcagg |
166 |
Q |
| |
|
|||||||||| || |||||||| | |||||||||||||| ||||||| |||||| |||||| |||| |
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|
| T |
11479357 |
tcattcctttggacttatctgaaatcttcaaagtatcagtcacatcaaatatataaatcttaacagg |
11479291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 11485600 - 11485520
Alignment:
| Q |
126 |
ttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtat |
206 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||| |||||| ||||| | ||||||| |||||| ||||| |||||| |
|
|
| T |
11485600 |
ttcaaagtatcagtcacatcaaatatataaatcttgagaggcaccataaacttttcccaattaacccacttaacggtgtat |
11485520 |
T |
|
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