View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_113 (Length: 273)

Name: NF6076_high_113
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_113
NF6076_high_113
[»] chr7 (1 HSPs)
chr7 (4-135)||(15874719-15874850)
[»] chr6 (2 HSPs)
chr6 (4-135)||(34635524-34635655)
chr6 (45-135)||(25004167-25004255)
[»] chr5 (1 HSPs)
chr5 (4-135)||(536068-536199)
[»] chr1 (3 HSPs)
chr1 (19-135)||(6835151-6835267)
chr1 (30-126)||(37668230-37668326)
chr1 (30-98)||(43408849-43408917)
[»] chr3 (2 HSPs)
chr3 (45-135)||(16474301-16474389)
chr3 (60-131)||(16974592-16974664)
[»] chr4 (1 HSPs)
chr4 (30-98)||(40457995-40458063)
[»] chr2 (2 HSPs)
chr2 (59-135)||(32736376-32736451)
chr2 (69-135)||(12775625-12775692)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 15874719 - 15874850
Alignment:
Q  4 atcaattcctaaatagtggaagttgttattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggaaatt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874719 atcaattcctaaatagtggaagttgttattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggaaatt 15874818  T
Q  104 agaccaagaaaaacgtgtggtatgaccatatc 135  Q
    ||||||||||||||||||||||||||||||||    
T  15874819 agaccaagaaaaacgtgtggtatgaccatatc 15874850  T

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Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 34635655 - 34635524
Alignment:
Q  4 atcaattcctaaatagtggaagttgttattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggaaatt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34635655 atcaattcctaaatagtggaagttgttattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggaaatt 34635556  T
Q  104 agaccaagaaaaacgtgtggtatgaccatatc 135  Q
    ||||||||||||||||||||||||||||||||    
T  34635555 agaccaagaaaaacgtgtggtatgaccatatc 34635524  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 25004255 - 25004167
Alignment:
Q  45 gtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggaaattagaccaagaaaaacgtgtggtatgaccatatc 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  25004255 gtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggcaattagaccaag--aaacgtgtggtatgaccatatc 25004167  T

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Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 536199 - 536068
Alignment:
Q  4 atcaattcctaaatagtggaagttgttattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggaaatt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  536199 atcaattcctaaatagtggaagttgttattacttctctcaagtaatgccactacacctaagtaattaggagatattttgaagcattttgattaggaaatt 536100  T
Q  104 agaccaagaaaaacgtgtggtatgaccatatc 135  Q
    ||||||||||||||||||||||||||||||||    
T  536099 agaccaagaaaaacgtgtggtatgaccatatc 536068  T

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Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 6835267 - 6835151
Alignment:
Q  19 gtggaagttgttattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggaaattagaccaagaaaaacg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6835267 gtggaagttgttattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattaagaaattagaccaagaaaaacg 6835168  T
Q  119 tgtggtatgaccatatc 135  Q
    |||||||||||||||||    
T  6835167 tgtggtatgaccatatc 6835151  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 37668230 - 37668326
Alignment:
Q  30 tattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggaaattagaccaagaaaaacgtgtggtat 126  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37668230 tattatttctctcaagtaatgccactacatccaagtaattaggagatattttgaagcattttgattaggcaattagaccaagaaaaacgtgtggtat 37668326  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 43408849 - 43408917
Alignment:
Q  30 tattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattagg 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43408849 tattatttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattagg 43408917  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 16474389 - 16474301
Alignment:
Q  45 gtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggaaattagaccaagaaaaacgtgtggtatgaccatatc 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  16474389 gtaatgccactacacccaagtaattaggagatattttgaagcattttgattaggcaattagaccaag--aaacgtgtggtatgaccatatc 16474301  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 16974664 - 16974592
Alignment:
Q  60 ccaagtaattaggagatattttgaagcat-tttgattaggaaattagaccaagaaaaacgtgtggtatgacca 131  Q
    |||||||| |||||||||||||||||||| ||||| |||| |||||||| | | |||||| |||||| |||||    
T  16974664 ccaagtaaataggagatattttgaagcatatttgactaggcaattagacaatgtaaaacgcgtggtacgacca 16974592  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 40458063 - 40457995
Alignment:
Q  30 tattacttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattagg 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40458063 tattatttctctcaagtaatgccactacacccaagtaattaggagatattttgaagcattttgattagg 40457995  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 32736376 - 32736451
Alignment:
Q  59 cccaagtaattaggagatattttgaagcattttgattaggaaattagaccaagaaaaacgtgtggtatgaccatatc 135  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  32736376 cccaagtaattaggagatattttgaagcattttgattaggcaattagaccaag-aaaacgtgtggtatgaccatatc 32736451  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 12775625 - 12775692
Alignment:
Q  69 taggagatattttgaagcat-tttgattaggaaattagaccaagaaaaacgtgtggtatgaccatatc 135  Q
    |||||||||||||||||||| ||||| |||| |||||||| | |||||||||||||||||||||||||    
T  12775625 taggagatattttgaagcatatttgactaggcaattagacaatgaaaaacgtgtggtatgaccatatc 12775692  T

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