View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_116 (Length: 269)
Name: NF6076_high_116
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_116 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 41572399 - 41572576
Alignment:
| Q |
92 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
191 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41572399 |
taataaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacagcataccccagcctcaaacttgtttactgctaaaaccgct |
41572498 |
T |
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| Q |
192 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttca |
269 |
Q |
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| T |
41572499 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttca |
41572576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 27754102 - 27753926
Alignment:
| Q |
92 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
27754102 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacgggtcaccgcaatataaacagcataccccagcctcaaacttgtt-actgctaaaaccgct |
27754004 |
T |
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| Q |
192 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttca |
269 |
Q |
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| T |
27754003 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaacttcactcgtagaacaaacacgccggcaccttca |
27753926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 263
Target Start/End: Original strand, 21941917 - 21942087
Alignment:
| Q |
93 |
aatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatata-cacaggataccccagcctcaaacttgtttactgctaaaaccgct |
191 |
Q |
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|||||||||||||||| | | ||||||||| |||||||| ||||||||||| || ||| | ||||||||||||||| ||||| |||| ||||| || |
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| T |
21941917 |
aatgaggctgccatataccatcctgcacaaa-ccagcacatgtcaccgcaatttaacacggcataccccagcctcaatcttgtag-ctgcgaaaactgca |
21942014 |
T |
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| Q |
192 |
gaacacctcctca-ttaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggca |
263 |
Q |
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|| | | | || |||| ||||||| || |||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
21942015 |
gagaaacccgtccgttactgtaagagacatgcttttggattccaacaccactcgtagaacaaacacgtcggca |
21942087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 138728 - 138684
Alignment:
| Q |
225 |
ttggattccaactccactcgtagaacaaacacgccggcaccttca |
269 |
Q |
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|||| ||||||||||||||||| |||||||| |||||||| |||| |
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| T |
138728 |
ttgggttccaactccactcgtaaaacaaacaagccggcacgttca |
138684 |
T |
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