View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_123 (Length: 260)

Name: NF6076_high_123
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_123
NF6076_high_123
[»] chr2 (6 HSPs)
chr2 (14-244)||(40056323-40056552)
chr2 (165-244)||(38356847-38356926)
chr2 (165-244)||(35063617-35063696)
chr2 (165-230)||(29453643-29453708)
chr2 (145-227)||(45513049-45513131)
chr2 (138-244)||(1299976-1300080)
[»] chr4 (6 HSPs)
chr4 (60-198)||(39484928-39485067)
chr4 (109-220)||(12007488-12007599)
chr4 (138-244)||(32641905-32642010)
chr4 (160-215)||(50072020-50072075)
chr4 (186-239)||(2486972-2487025)
chr4 (168-220)||(12007919-12007971)
[»] scaffold0119 (1 HSPs)
scaffold0119 (115-244)||(36-163)
[»] chr6 (2 HSPs)
chr6 (115-244)||(26670631-26670758)
chr6 (165-226)||(12029351-12029412)
[»] chr8 (5 HSPs)
chr8 (151-244)||(41456052-41456145)
chr8 (160-245)||(13231843-13231928)
chr8 (149-229)||(2623232-2623312)
chr8 (165-244)||(7043106-7043185)
chr8 (165-215)||(35595-35645)
[»] chr1 (6 HSPs)
chr1 (168-241)||(28651695-28651768)
chr1 (140-214)||(48621163-48621237)
chr1 (165-241)||(25476083-25476159)
chr1 (137-244)||(27818738-27818844)
chr1 (138-244)||(44634034-44634140)
chr1 (138-215)||(48621841-48621918)
[»] chr5 (4 HSPs)
chr5 (165-244)||(24153970-24154049)
chr5 (160-215)||(17115739-17115794)
chr5 (138-244)||(31079720-31079826)
chr5 (173-229)||(29108111-29108166)
[»] chr3 (8 HSPs)
chr3 (138-230)||(45146663-45146755)
chr3 (165-244)||(45004715-45004794)
chr3 (160-215)||(50766027-50766082)
chr3 (169-244)||(51489853-51489928)
chr3 (170-226)||(35744535-35744591)
chr3 (149-241)||(45005505-45005597)
chr3 (160-240)||(50823979-50824059)
chr3 (160-240)||(50851801-50851881)
[»] chr7 (2 HSPs)
chr7 (165-226)||(35263740-35263801)
chr7 (168-244)||(24555973-24556049)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 40056552 - 40056323
Alignment:
Q  14 agaaggagcatgaataggatcaccggagaggaagcaaactatacaacaataatgaagaaccac-gttaaatattagtggaaaattctctaaagaaattaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40056552 agaaggagcatgaataggatcaccggagaggaagcaaacta--caacaataatgaagaaccaccgttaaatattagtggaaaattctctaaagaaattaa 40056455  T
Q  113 cagaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagt 212  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40056454 cagaaagttaactgtcttagcaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagt 40056355  T
Q  213 gtcgttttcataaacctcagcggaggtgagtg 244  Q
    ||| ||||||||||||||||||||||||||||    
T  40056354 gtcattttcataaacctcagcggaggtgagtg 40056323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 38356926 - 38356847
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtg 244  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||| ||||| | || ||| ||||||| |||||||||||    
T  38356926 aacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtg 38356847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 35063696 - 35063617
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtg 244  Q
    ||||||||||||||| ||||||||||| |||||||| || |||| |||| | |||| ||||||||||  |||||||||||    
T  35063696 aacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgacattttaataaacctcaagggaggtgagtg 35063617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 29453643 - 29453708
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctc 230  Q
    ||||||| ||||||||||||||||||  |||||||| | |||||||||||  ||||||||||||||    
T  29453643 aacttaaaggaggttaatgtaagtttcaaaactagaggaggtgttagtgttattttcataaacctc 29453708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 45513049 - 45513131
Alignment:
Q  145 gtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaac 227  Q
    |||||||||||||  || | |||||| ||||||||||||| ||||| ||||||||| |||||||   ||||||||| ||||||    
T  45513049 gtgattgtctatttgattaaaacttacgggaggttaatgttagtttcgaaactagagggggtgtcgatgtcgttttaataaac 45513131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 1300080 - 1299976
Alignment:
Q  138 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 237  Q
    |||||| ||| |||||||||  || ||||| | || |||||||  || |||||||||||||||||||||||  ||||| |||| |||||| |||  ||||    
T  1300080 aagggaggtgtttgtctatttcattagaacattagagaggttagcgttagttttgaaactagaaggggtgt--gtgtcattttaataaacttcaaaggag 1299983  T
Q  238 gtgagtg 244  Q
    |||||||    
T  1299982 gtgagtg 1299976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 39484928 - 39485067
Alignment:
Q  60 caataatgaagaaccac-gttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagaaaacaagggatgtgattgtctatta 158  Q
    ||||| ||||||||| | ||||||||||| ||||||| |||||||||||| |||||| || ||||| || |||  ||| |||||||||| || | |||||    
T  39484928 caatattgaagaacctccgttaaatattaatggaaaaatctctaaagaaagtaacagtaatttaacagtgttaacaaagaagggatgtgcttatttatta 39485027  T
Q  159 tatgagaacttaagggaggttaatgtaagttttgaaacta 198  Q
     ||||||||||||| ||||||| |||||||||||||||||    
T  39485028 catgagaacttaagcgaggttagtgtaagttttgaaacta 39485067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 12007599 - 12007488
Alignment:
Q  109 ttaacagaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgt 208  Q
    |||||||||||||||  || |||   || |||||| ||| |||| ||||  ||||||||||||| |||||||||||| ||||| |||||||| |||||||    
T  12007599 ttaacagaaagttaatggtgttaatgaaaaagggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgt 12007500  T
Q  209 tagtgtcgtttt 220  Q
     |||||| ||||    
T  12007499 cagtgtcatttt 12007488  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 32641905 - 32642010
Alignment:
Q  138 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 237  Q
    ||||| |||| | ||||||| |||||||| ||||||||||||||| |||||||| ||| || |||||| ||||||||| ||| |||| || || | ||||    
T  32641905 aaggggtgtgttagtctattttatgagaatttaagggaggttaatataagttttaaaatta-aaggggggttagtgtcatttacatagacttcgggggag 32642003  T
Q  238 gtgagtg 244  Q
    |||||||    
T  32642004 gtgagtg 32642010  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 50072020 - 50072075
Alignment:
Q  160 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 215  Q
    ||||||||||||||||||||  |||||||||| |||||| | ||||||||||||||    
T  50072020 atgagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagtgtc 50072075  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 2486972 - 2487025
Alignment:
Q  186 agttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggt 239  Q
    |||||| |||||||||||||||| ||||||||||| ||| |||| || ||||||    
T  2486972 agttttaaaactagaaggggtgtcagtgtcgttttaatagaccttagtggaggt 2487025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 12007919 - 12007971
Alignment:
Q  168 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgtttt 220  Q
    ||||||||||||| |||||||||| ||| |||| ||||||| |||||| ||||    
T  12007919 ttaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcatttt 12007971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 36 - 163
Alignment:
Q  115 gaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 214  Q
    |||||||||| || |||  ||| |||||| ||| |||||||||  || ||||| | ||||||||||  || |||||||||||||||||||||||  ||||    
T  36 gaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggggtgt--gtgt 133  T
Q  215 cgttttcataaacctcagcggaggtgagtg 244  Q
    | |||| ||||||||||  |||||||||||    
T  134 cattttaataaacctcaagggaggtgagtg 163  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 26670758 - 26670631
Alignment:
Q  115 gaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 214  Q
    |||||||||| || |||  ||| |||||| ||| |||||||||  || ||||| | ||||||||||  || |||||||||||||||||||||||  ||||    
T  26670758 gaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggggtgt--gtgt 26670661  T
Q  215 cgttttcataaacctcagcggaggtgagtg 244  Q
    | |||| ||||||||||  |||||||||||    
T  26670660 cattttaataaacctcaagggaggtgagtg 26670631  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 12029412 - 12029351
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 226  Q
    ||||||||||| ||||||||   |||||||||||||  ||||||||||||| |||| |||||    
T  12029412 aacttaagggatgttaatgttcattttgaaactagagagggtgttagtgtcattttaataaa 12029351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 41456052 - 41456145
Alignment:
Q  151 gtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtg 244  Q
    ||||||| || ||||||||||||||||||| |||||||||  ||| |||| | | ||| |||||| |||||||| ||||||| |||||||||||    
T  41456052 gtctattttacgagaacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtg 41456145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 13231843 - 13231928
Alignment:
Q  160 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtga 245  Q
    ||||||||| ||||||||||| |||||||||| ||| |||| ||||||| |||||| ||||  ||||||| |   |||||||||||    
T  13231843 atgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaaccttaagtgaggtgagtga 13231928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 2623232 - 2623312
Alignment:
Q  149 ttgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 229  Q
    |||||||||  |||| |||| ||||||||||| |||||||||| ||| |||| ||| ||| |||||| |||| ||||||||    
T  2623232 ttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaacct 2623312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 7043185 - 7043106
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtg 244  Q
    |||||||||||||||||| |   |||| |||||||| | |||||||||| | |||| |||||||| || |||||||||||    
T  7043185 aacttaagggaggttaatattcattttaaaactagaggtggtgttagtgccattttaataaaccttaggggaggtgagtg 7043106  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 35645 - 35595
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 215  Q
    ||||||||| ||||||||||||||||| |||||| || ||||||| |||||    
T  35645 aacttaaggaaggttaatgtaagttttaaaactaaaaagggtgtttgtgtc 35595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 28651768 - 28651695
Alignment:
Q  168 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtga 241  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||| |||| ||| ||||||| ||||||||    
T  28651768 ttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcattttaatagacctcaggggaggtga 28651695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 48621237 - 48621163
Alignment:
Q  140 gggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 214  Q
    |||||||| |||||||||| |||| |||||||||||| |||||||||  ||| |||||||| ||||||| |||||    
T  48621237 gggatgtgtttgtctattacatgataacttaagggagattaatgtaaaatttaaaactagagggggtgtcagtgt 48621163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 25476083 - 25476159
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtga 241  Q
    ||||| |||||||||  |||||||||| |||||||| || |||| |||||| |||| ||||||||||| ||||||||    
T  25476083 aacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtcattttaataaacctcaggggaggtga 25476159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 27818844 - 27818738
Alignment:
Q  137 caagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcgga 236  Q
    ||||||| |||  ||||||||| | || || |||||||| || |||||| ||||| ||||||||  ||||||||||||| |||||||||| | ||| |||    
T  27818844 caagggaggtgtctgtctattaaaggaaaatttaagggatgtaaatgtatgttttaaaactagagagggtgttagtgtcattttcataaatc-cagggga 27818746  T
Q  237 ggtgagtg 244  Q
    ||||||||    
T  27818745 ggtgagtg 27818738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 44634034 - 44634140
Alignment:
Q  138 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 237  Q
    |||||| |||||||| ||||  ||||||||||||||||||||  | |  ||||| |||||||| ||||||| | |||| ||||  ||||| | || ||||    
T  44634034 aagggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcattttagtaaactttaggggag 44634133  T
Q  238 gtgagtg 244  Q
    |||||||    
T  44634134 gtgagtg 44634140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 48621841 - 48621918
Alignment:
Q  138 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 215  Q
    |||||| |||||||| ||||| |  | |||||||||||||||| |||| ||||| |||||| | |||||||| |||||    
T  48621841 aagggaggtgattgtgtattacaaaaaaacttaagggaggttagtgtatgtttttaaactaaagggggtgttggtgtc 48621918  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 24153970 - 24154049
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtg 244  Q
    |||||||||||||||||||| |||||| |||||||| ||||| | | |||| |||| |||||||| || |||||||||||    
T  24153970 aacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggtgagtg 24154049  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 17115794 - 17115739
Alignment:
Q  160 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 215  Q
    ||||||||||||||||||||  |||||||||| ||||||||   ||||||||||||    
T  17115794 atgagaacttaagggaggttggtgtaagttttaaaactagagttggtgttagtgtc 17115739  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 31079720 - 31079826
Alignment:
Q  138 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 237  Q
    |||||||||| |||||||||   ||| ||| ||||||||||||||||   |||| ||||||||   |||||||||| | |||| |||||||| || ||||    
T  31079720 aagggatgtgtttgtctatttgctgaaaacctaagggaggttaatgttcattttaaaactagagaaggtgttagtgccattttaataaaccttaggggag 31079819  T
Q  238 gtgagtg 244  Q
    || ||||    
T  31079820 gtaagtg 31079826  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 29108166 - 29108111
Alignment:
Q  173 ggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 229  Q
    |||||||| |||||||||| |||||||| |||||||||||||| ||||  |||||||    
T  29108166 ggaggttagtgtaagttttaaaactaga-ggggtgttagtgtcatttttgtaaacct 29108111  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 45146663 - 45146755
Alignment:
Q  138 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctc 230  Q
    |||||| ||| |||||||||  || ||||| |||||||||||| ||| |||||| ||| |||||||| |||| ||||| |||| |||||||||    
T  45146663 aagggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacctc 45146755  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 45004794 - 45004715
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtg 244  Q
    ||||||||||||||| ||||||| ||| |||||| | ||||||| | || | |||| ||||||||||| |||||||||||    
T  45004794 aacttaagggaggttcatgtaagatttaaaactaaagggggtgtcattgacattttaataaacctcagaggaggtgagtg 45004715  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 50766082 - 50766027
Alignment:
Q  160 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 215  Q
    |||| |||||||||||| ||| |||| ||||| |||||||| ||||||||||||||    
T  50766082 atgaaaacttaagggagattagtgtaggttttcaaactagagggggtgttagtgtc 50766027  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 51489853 - 51489928
Alignment:
Q  169 taagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtg 244  Q
    |||||||||||||| |   |||| |||||||| |||||||||||| | |||| |||||||| || |||||||||||    
T  51489853 taagggaggttaatattcattttaaaactagagggggtgttagtgccattttaataaaccttaggggaggtgagtg 51489928  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 35744535 - 35744591
Alignment:
Q  170 aagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 226  Q
    ||||||||||||||| |||||||||| |||| ||| ||| | ||||||||| |||||    
T  35744535 aagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaa 35744591  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 45005505 - 45005597
Alignment:
Q  149 ttgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtga 241  Q
    |||||||||  ||||||||||||||||| | | ||| |||||| |||||||  |   |||||||||| |||| ||||||||||  ||||||||    
T  45005505 ttgtctatttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtga 45005597  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 50824059 - 50823979
Alignment:
Q  160 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtg 240  Q
    |||| ||||||| |||||||| |||| ||||| ||||||||  ||||||||||||| |||  ||||| ||||  |||||||    
T  50824059 atgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtg 50823979  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 50851801 - 50851881
Alignment:
Q  160 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtg 240  Q
    |||| ||||||| |||||||| |||| ||||| ||||||||  ||||||||||||| |||  ||||| ||||  |||||||    
T  50851801 atgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtg 50851881  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 35263801 - 35263740
Alignment:
Q  165 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 226  Q
    ||||||||||||||||||||||||||  ||| ||||| || ||||| |||| ||||||||||    
T  35263801 aacttaagggaggttaatgtaagtttcaaaattagaaaggatgttaatgtcattttcataaa 35263740  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 24555973 - 24556049
Alignment:
Q  168 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtg 244  Q
    |||||||||||||||||   || | |||||||| |||||||| |||||||||  | ||||||||| |||||| ||||    
T  24555973 ttaagggaggttaatgtctattattaaactagagggggtgtttgtgtcgtttgaacaaacctcaggggaggttagtg 24556049  T

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