View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_13 (Length: 555)
Name: NF6076_high_13
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 20 - 552
Target Start/End: Original strand, 7010038 - 7010570
Alignment:
| Q |
20 |
ccactttatgccactttacatatacagtaaatatatagtctatgctatttttatagcattttgtagaatttggattgcatgtagtcagaaatcctctcat |
119 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| |
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| T |
7010038 |
ccactttatgccactttacatatatagtaaatatatagtctatgctatttttatagcattttgcagaatttggattgcatgtagtcggcaatcctctcat |
7010137 |
T |
|
| Q |
120 |
tcactcagccagtacatcactggtcgttggaatttgatcaggatccaacaactacatgatgtgtcggctcaatgaatgcggagaatttctgactgcaaac |
219 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7010138 |
tcactcagccggtacatcattggtcgttggaatttgatcaggatccaacaactacatgatgtgccggctcaatgaatgcggagaatttctgactgcaaac |
7010237 |
T |
|
| Q |
220 |
aatccgattttgtgttacgagcgatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtgag |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010238 |
aatccgattttgtgttacaagcgatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtgag |
7010337 |
T |
|
| Q |
320 |
aaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttg |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010338 |
aaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttg |
7010437 |
T |
|
| Q |
420 |
ctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagc |
519 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010438 |
ctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagc |
7010537 |
T |
|
| Q |
520 |
aacctactaagtttgatatatgcaccacccttt |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
7010538 |
aacctactaagtttgatatatgcaccacccttt |
7010570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 49 - 552
Target Start/End: Original strand, 7006999 - 7007492
Alignment:
| Q |
49 |
aatatatagtctatgctatttttatagcattttgtagaatttggattgcatgtagtcagaaatcctctcattcactcagccagtacatcactggtcgttg |
148 |
Q |
| |
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|||||||||||||| ||||||||| || |||||| ||| ||||||||| || |||| | ||||||||||||||||| | |||||||| ||||||||| |
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|
| T |
7006999 |
aatatatagtctatcatatttttattgctttttgtggaacttggattgcctgaagtcggtaatcctctcattcactcgatcggtacatcattggtcgttg |
7007098 |
T |
|
| Q |
149 |
gaatttgatcaggatccaacaactacatgatgtgtcggctcaatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacgagcgatgaat |
248 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| || ||| |||||||||||||||||||||| || | ||||||| |||||||| |||| |||||| |
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|
| T |
7007099 |
gaatttgatatggatccaacaactgcatgatgtgccgactccgtgaatgcggagaatttctgacttcagataatccgaatttgtgtttcgagtgatgaag |
7007198 |
T |
|
| Q |
249 |
tttgtacggttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatgg |
348 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7007199 |
tttgtagggttgatgtgttaatttgtt----------ttgtgttatatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatgg |
7007288 |
T |
|
| Q |
349 |
acgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7007289 |
acgttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatca |
7007388 |
T |
|
| Q |
449 |
ttcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatatgcaccacc |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7007389 |
ttcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatttgcaccacc |
7007488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 9e-59; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 297 - 516
Target Start/End: Original strand, 1358572 - 1358791
Alignment:
| Q |
297 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
396 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
1358572 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1358671 |
T |
|
| Q |
397 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
1358672 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1358771 |
T |
|
| Q |
497 |
agtttcattgctcacacacc |
516 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
1358772 |
agtttcattgcacacacacc |
1358791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 297 - 516
Target Start/End: Original strand, 1374124 - 1374343
Alignment:
| Q |
297 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
396 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
1374124 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1374223 |
T |
|
| Q |
397 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
1374224 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1374323 |
T |
|
| Q |
497 |
agtttcattgctcacacacc |
516 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
1374324 |
agtttcattgcacacacacc |
1374343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 297 - 516
Target Start/End: Original strand, 1394671 - 1394890
Alignment:
| Q |
297 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
396 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1394671 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1394770 |
T |
|
| Q |
397 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1394771 |
ttctcaagtgttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagttcaatgcatc |
1394870 |
T |
|
| Q |
497 |
agtttcattgctcacacacc |
516 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1394871 |
agtttcattgcacacacacc |
1394890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 297 - 516
Target Start/End: Original strand, 1350666 - 1350885
Alignment:
| Q |
297 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
396 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
1350666 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1350765 |
T |
|
| Q |
397 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
1350766 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1350865 |
T |
|
| Q |
497 |
agtttcattgctcacacacc |
516 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1350866 |
agtttcattgcacacacacc |
1350885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 297 - 516
Target Start/End: Original strand, 1384320 - 1384539
Alignment:
| Q |
297 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
396 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1384320 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1384419 |
T |
|
| Q |
397 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1384420 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1384519 |
T |
|
| Q |
497 |
agtttcattgctcacacacc |
516 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1384520 |
agtttcattgcacacacacc |
1384539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 297 - 516
Target Start/End: Original strand, 1390425 - 1390644
Alignment:
| Q |
297 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
396 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1390425 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1390524 |
T |
|
| Q |
397 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
1390525 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1390624 |
T |
|
| Q |
497 |
agtttcattgctcacacacc |
516 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1390625 |
agtttcattgcacacacacc |
1390644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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