View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_135 (Length: 251)

Name: NF6076_high_135
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_135
NF6076_high_135
[»] chr6 (21 HSPs)
chr6 (4-243)||(2954585-2954829)
chr6 (154-243)||(2996703-2996793)
chr6 (152-223)||(2938116-2938187)
chr6 (152-242)||(2935255-2935349)
chr6 (163-223)||(2974674-2974734)
chr6 (152-243)||(2929965-2930059)
chr6 (81-144)||(2996867-2996930)
chr6 (154-223)||(2983524-2983593)
chr6 (85-144)||(2935124-2935183)
chr6 (152-205)||(2927816-2927869)
chr6 (192-243)||(2965228-2965280)
chr6 (81-140)||(2937981-2938040)
chr6 (85-144)||(2929834-2929893)
chr6 (81-140)||(2974528-2974587)
chr6 (185-235)||(2986421-2986472)
chr6 (81-144)||(3003278-3003341)
chr6 (2-56)||(2978488-2978542)
chr6 (81-144)||(2927681-2927744)
chr6 (2-56)||(2937702-2937756)
chr6 (2-56)||(2974249-2974303)
chr6 (81-122)||(2965030-2965071)
[»] scaffold0024 (2 HSPs)
scaffold0024 (153-242)||(34573-34663)
scaffold0024 (4-56)||(44713-44765)
[»] chr7 (3 HSPs)
chr7 (152-242)||(3339681-3339775)
chr7 (81-144)||(3339546-3339609)
chr7 (2-56)||(3339267-3339321)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 2954585 - 2954829
Alignment:
Q  4 gagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgtttggagtagtgacattaccctaatggtctttgcaaagaattaaatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2954585 gagttcttggaattcctcaattaagagttgatgatcagaccgatattttgtttggagtagtgtcattaccctaatggtctttgcaaagaattaaatgctt 2954684  T
Q  104 tttgtaggaatccttggcgtaagttgaaggctactctcaggtgttatc-----acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  2954685 tttgtaggaatccttggcgtaagttgaaggctactctcaggtgttatcactttacttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagt 2954784  T
Q  199 gatttctttcattgttgagttcatattattgctattagtattatc 243  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  2954785 gatttctttcaatgttgagttcatattattgctattagtattatc 2954829  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 2996793 - 2996703
Alignment:
Q  154 ttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat-attattgctattagtattatc 243  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2996793 ttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2996703  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 2938116 - 2938187
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 223  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2938116 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcata 2938187  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 2935255 - 2935349
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaa---gcctcctagtgatttctttcattgttgagttcat-attattgctattagtattat 242  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  2935255 acttcaatcagtttgttctgtcttgcaagttgtacaacaagcctcctagtgatttctttcattgttgagttcataattatttctattagtattat 2935349  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 2974674 - 2974734
Alignment:
Q  163 tttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 223  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2974674 tttgttctgtcttgcaagtagtacaagcatcctagtgatttctttcattgttgagttcata 2974734  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 2929965 - 2930059
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctag--tgatttctttcattgttgagttcat-attattgctattagtattatc 243  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||| |||||||||||||| ||||||| ||||  |||||||    
T  2929965 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagcttgatttcttttattgttgagttcataattattgttattcttattatc 2930059  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 2996930 - 2996867
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2996930 tctttgcaaggacttaaatgctttttgtaggaatccttggcataagttgaaggctactctcagg 2996867  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 2983524 - 2983593
Alignment:
Q  154 ttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 223  Q
    ||||| || ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  2983524 ttcaaacagtttgttctgtcttgcaaatagtacaagcatcctagtcatttctttcattgttgagttcata 2983593  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 2935124 - 2935183
Alignment:
Q  85 tgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  2935124 tgcaaagacttaaatgctttttgtaagaatccttggcataagttgaaggctactctcagg 2935183  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 2927816 - 2927869
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttct 205  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2927816 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttct 2927869  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 2965228 - 2965280
Alignment:
Q  192 tcctagtgatttctttcattgttgagttcat-attattgctattagtattatc 243  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2965228 tcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2965280  T

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Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 2937981 - 2938040
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactct 140  Q
    |||||||||||||||||||||||| || || |||||||||| ||||||||||||||||||    
T  2937981 tctttgcaaagaattaaatgctttctgcagtaatccttggcataagttgaaggctactct 2938040  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 2929834 - 2929893
Alignment:
Q  85 tgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||||||| |||||||||||||||  ||||||||||| || |||||||||||||||||||    
T  2929834 tgcaaagacttaaatgctttttgttagaatccttggcataggttgaaggctactctcagg 2929893  T

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Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 2974528 - 2974587
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactct 140  Q
    ||||||||||||||| ||||||| ||||||||||||||||| || |||||||||| ||||    
T  2974528 tctttgcaaagaattgaatgcttattgtaggaatccttggcataggttgaaggctgctct 2974587  T

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Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 2986421 - 2986472
Alignment:
Q  185 acaagcctcctagtgatttctttcattgttgagttcat-attattgctatta 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  2986421 acaagcctcctagtgatttctttcattgttgagttcataattattgttatta 2986472  T

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Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 3003341 - 3003278
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||| ||||||| |||||||||| ||||| |||||| |||| ||||||||||||||||||||||    
T  3003341 tcttggcaaagacttaaatgcttattgtaagaatccatggcataagttgaaggctactctcagg 3003278  T

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Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 2978488 - 2978542
Alignment:
Q  2 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||||| ||||||||||||||||||||| |||  ||||||||||||||||    
T  2978488 aggagttcttgaaattcctcaattaagagttgaggatgggaccgaaattttgttt 2978542  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 2927681 - 2927744
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||||||||||| |||||||||| ||||| ||||||  | | ||||||||||||||||||||||    
T  2927681 tctttgcaaagacttaaatgcttattgtaagaatccacgacataagttgaaggctactctcagg 2927744  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 2937702 - 2937756
Alignment:
Q  2 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||    
T  2937702 aggagttcttgaaattcctcaattaacagttgaggattcgaccgaaattttgttt 2937756  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 2974249 - 2974303
Alignment:
Q  2 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||||| |||||||||||||| |||| | |||  ||||||||||||||||    
T  2974249 aggagttcttgaaattcctcaattaacagttcaagatgggaccgaaattttgttt 2974303  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 2965030 - 2965071
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcg 122  Q
    |||||||||||| || |||||||||||| |||||||||||||    
T  2965030 tctttgcaaagatttgaatgctttttgtgggaatccttggcg 2965071  T

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Target: scaffold0024 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 34663 - 34573
Alignment:
Q  153 cttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat-attattgctattagtattat 242  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34663 cttcaatcagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattat 34573  T

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Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 44765 - 44713
Alignment:
Q  4 gagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||| ||||||||||||||||| |||||||||  | ||||||||||||    
T  44765 gagttcttgaaattcctcaattaagagctgatgatcaacctgaaattttgttt 44713  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 3339681 - 3339775
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat----attattgctattagtattat 242  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    ||||||||| ||||||||||    
T  3339681 acttcaatcagtttgttctgtcttgcaagtagtacaggcctcctagtgatttctttctttgttgagttcatcataattattgctcttagtattat 3339775  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 3339546 - 3339609
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||| ||||||| ||||||| |||||||| ||||||||||| || ||||||||| |||||||||    
T  3339546 tcttggcaaagacttaaatgatttttgtaagaatccttggcataggttgaaggccactctcagg 3339609  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 3339267 - 3339321
Alignment:
Q  2 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||    
T  3339267 aggagttcttgaaattcctcaattaacagttgacgatgggaccgaaattttgttt 3339321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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